Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 6 Aligned Residues 336 % Identity 41% Template c1qe0B_ PDB info PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of apo s. aureus histidyl-trna synthetase Resolution 2.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	I	P	R	G	T	Q	D	I	L	P	E	D	S	K	K	W	R	Y	I	E	N	Q	L	D	E	L	M	T	F	Y	N	Y	K	E	I	R	T	P	I	F	E	S	T	D	L	F	A	.	.	.	.	.	.	.	.	.	.	.	R	E	M	Y	T	F	K	D	K	G	D	R	S	I	T	L	R	P	E	G
Template Known Secondary structure						T	T																											T								S									.	.	.	.	.	.	.	.	.	.	.							S											S		S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50												.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		85	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		T	A	G	C	V	R	A	G	I	E	H	.	.	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	E	H	V	T
Query Conservation													.	.
Alig confidence													.	.																					.	.	.	.	.	.	.																																						.
Template Conservation																																			.	.	.	.	.	.	.																																						.
Template Sequence		T	A	A	V	V	R	S	Y	I	E	H	K	M	Q	G	N	P	N	Q	P	I	K	L	Y	Y	N	G	P	M	F	R	Y	Y	.	.	.	.	.	.	.	R	Q	F	N	Q	F	G	V	E	A	I	G	A	E	N	P	S	V	D	A	E	V	L	A	M	V	M	H	I	Y	Q	S	F	G	L	K	H	.	L	K
Template Known Secondary structure												T	T	G	G	G		S	S		S														.	.	.	.	.	.	.												S																				T	T	T				.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.																																						.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S	R	E	H	F	A	G	L	C	K
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	I	N	S	V	G	D	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	K	A	Y	Y	E	Q	V	K	A
Template Known Secondary structure										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170																																																												.	.	.	.	.	.	.	.	.	180	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	.	.	.	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L	V	Q	A	V
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		Y	L	D	D	L	G	I	P	Y	T	E	D	P	N	L	V	R	G	L	D	Y	Y	T	H	T	A	F	E	L	M	M	D	N	P	N	Y	D	G	A	I	T	T	L	C	G	G	G	R	Y	N	G	L	L	E	L	L	D	G	P	S	E	T	G	I	G	F	A	L	S	I	E	R	L	L	L	A	L	E	E	E
Template Known Secondary structure							T							T	T						T	T			S										T	T	S	T	T	S												S					T	T																							T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E	S	E	V	A	N	G	T	A	V	V
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		G	I	E	L	D	I	E	E	N	L	D	L	F	I	V	T	M	G	D	Q	A	D	R	Y	A	V	K	L	L	N	H	L	R	H	N	.	.	G	I	K	A	D	K	D	Y	L	Q	R	K	I	K	G	Q	M	K	Q	A	D	R	L	G	A	K	F	T	I	V	I	G	D	Q	E	L	E	N	N	K	I	D	V
Template Known Secondary structure		T				S						S																							T	T	.	.	T							S	S														T	T		S													T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	L	R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	M	T	T	G	E	S	E	T	I	E	L	D	A	L	V	E	Y	F	K
Template Known Secondary structure				T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions