Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 23 Aligned Residues 326 % Identity 18% Template c1h4tD_ PDB info PDB header:aminoacyl-trna synthetase Chain: D: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline Resolution 2.9 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T	A
Query Conservation
Alig confidence																																																							.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		P	V	R	G	T	I	V	V	R	P	Y	G	Y	A	I	W	E	N	I	Q	Q	V	L	D	R	M	F	K	E	T	G	H	Q	N	A	Y	F	P	L	F	I	P	M	S	F	L	F	S	P	E	L	A	V	.	.	.	.	.	.	V	T	H	A	G	G	E	E	L	E	E	P	L	A	V	R	P	T	S	E	T
Template Known Secondary structure		S	S	T	T																										T	T								S				G	G	G				S	S				.	.	.	.	.	.					T	T											S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		87	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.
Predicted Secondary structure										.																											.	.																								.	.	.												.
Query SS confidence										.																											.	.																								.	.	.												.
Query Sequence		G	C	V	R	A	G	I	E	.	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	.	.	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	.	.	.	L	I	M	L	T	A	R	W	W	R	A	.	L	G	I	S	E
Query Conservation										.																											.	.																								.	.	.												.
Alig confidence										.																											.	.																								.	.	.												.
Template Conservation
Template Sequence		V	I	G	Y	M	W	S	K	W	I	R	S	W	R	D	L	P	Q	L	L	N	Q	W	G	N	V	V	R	W	E	M	R	T	R	P	F	L	R	T	S	E	F	L	W	Q	E	G	H	T	A	H	A	T	R	E	E	A	E	E	E	V	R	R	M	L	S	I	Y	A	R	L	A	R	E	Y	A	A	I	P	V
Template Known Secondary structure													B	G	G	G																S	S		B	T	T	T	B		S												S	S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	T	L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S	R	E	H	F	A	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	G	L	K	T	E	K	E	K	F	A	G	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								G	G	G	S		T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	C	K	L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																							.	.	.	.	.																																.	.	.								.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																							.	.	.	.	.																																.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Y	T	T	T	I	E	A	L	M	K	D	G	K	A	L	Q	A	G	T	S	H	Y	.	.	.	.	.	L	G	E	N	F	A	R	A	F	D	I	K	F	Q	D	R	D	L	Q	V	K	Y	V	H	T	T	S	W	G	L	S	.	.	.	W	R	F	I	G	A	I	I	M	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.										T	T	S											.	.	.	.	.			T						T	T						T	T	S														.	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																							.	.	.	.	.																																.	.	.
Template SS confidence
											210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.
					317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.						.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																						.	.	.	.	.																															.
Query SS confidence		.	.	.																						.	.	.	.	.																															.
Query Sequence		.	.	.	Q	A	V	N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	.	.	.	.	.	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	.	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L
Query Conservation		.	.	.																						.	.	.	.	.																															.
Alig confidence		.	.	.																						.	.	.	.	.																		.	.												.
Template Conservation																																																.	.
Template Sequence		H	G	D	D	R	G	L	V	L	P	P	R	L	A	P	I	Q	V	V	I	V	P	I	Y	K	D	E	S	R	E	R	V	L	E	A	A	Q	G	L	R	Q	A	L	L	A	Q	.	.	G	L	R	V	H	L	D	D	R	D	Q	H	T	P	G	Y	K	F	H	E	W	E	L	K	G	V	P	F	R	V	E	L
Template Known Secondary structure				B	T	T	B					T	T	T		S		S									T	T	T																	T	T	.	.	T									T	T	S															S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	S	E	V	A	N	G	T	A	V	V	K	D	L	R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R	T	L	L
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		G	P	K	D	L	E	G	G	Q	A	V	L	A	S	R	.	L	G	G	K	E	T	L	P	L	A	A	L	P	E	A	L	P	G	K	L
Template Known Secondary structure								T	T							T	.	T	S							T	T	T
Template Predicted Secondary structure																	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low