Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 10 Aligned Residues 361 % Identity 17% Template c1fyfB_ PDB info PDB header:ligase Chain: B: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog Resolution 1.65 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T
Query Conservation
Alig confidence																																																				.	.														.
Template Conservation																																																				.	.														.
Template Sequence		E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	.	.	G	H	W	D	N	Y	K	D	A	M	F	T	T	.	S	S	E	N	R	E	Y	C	I	K	P	M	N	C
Template Known Secondary structure		T	T	S	T	T																										T	T								S											.	.	T						G	G	G					.			T	T							S		S
Template Predicted Secondary structure																																																				.	.														.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.
		86	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																											.	.	.	.																						.	.
Query SS confidence											.																											.	.	.	.																						.	.
Query Sequence		A	G	C	V	R	A	G	I	E	.	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	.	.	.	.	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	.	.	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S
Query Conservation											.																											.	.	.	.																						.	.
Alig confidence											.																											.	.	.	.																						.	.
Template Conservation
Template Sequence		P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E
Template Known Secondary structure									T	S	S			B	G	G	G		S															G	G	G		B	T	T	T	B		S													G	G	G																				T		S
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		159	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		E	H	V	T	L	E	L	.	.	.	.	.	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S
Query Conservation									.	.	.	.	.
Alig confidence			.						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.										S	S			S																			T	T							T	T		S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		415		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	H	F	A	G	L	C	K	L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	.	.	.	.	.	.	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T	T	B										T	T													S	S			.	.	.	.	.	.			T	T						T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template SS confidence
														461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490							.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
		314	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		L	L	V	.	.	Q	A	V	N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E	S	E
Query Conservation					.	.
Alig confidence					.	.																																							.	.
Template Conservation																																													.	.
Template Sequence		G	I	L	T	E	E	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	.	.	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E
Template Known Secondary structure									T	T				T	T	T		S	S							S	S	G	G	G														T	.	.	T									S	S												T	T		S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.			.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	N	G	T	A	V	V	K	D	L	R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R	T	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I
Template Known Secondary structure					T							T	T
Template Predicted Secondary structure
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.