Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 1 Aligned Residues 415 % Identity 42% Template c1adyA_ PDB info PDB header:trna synthetase Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	V	R	G	T	K	D	L	F	G	K	E	L	R	M	H	Q	R	I	V	A	T	A	R	K	V	L	E	A	A	G	A	L	E	L	V	T	P	I	F	E	E	T	Q	V	F	E	K	G	V	G	A	A	T	D	I	V	R	K	E	M	F	T	F	Q	D	R	G	G	R	S	L	T	L	R	P	E	G	T
Template Known Secondary structure					T	T																										T	T								S													T	T	S													T	T	S							S		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		86	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		A	G	C	V	R	A	G	I	E	.	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	E	H	V	T	L	E
Query Conservation											.
Alig confidence											.																																																																		.
Template Conservation																																																																													.
Template Sequence		A	A	M	V	R	A	Y	L	E	H	G	M	K	V	W	P	Q	P	V	R	L	W	M	A	G	P	M	F	R	A	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	V	N	Y	E	A	L	G	S	E	N	P	I	L	D	A	E	A	V	V	L	L	Y	E	C	L	K	E	L	G	L	R	R	.	L	K	V	K
Template Known Secondary structure											T	T	G	G	G	S	S	S	S													S			B	T	T	B		S											S																					T	T				.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	.	.	A	L	G	D	Y	L	D	E	E	S	R	E	H	F	A	G	L	C	K
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		L	S	S	V	G	D	P	E	D	R	A	R	Y	N	A	Y	L	R	E	V	L	S	P	H	R	E	A	L	S	E	D	S	K	E	R	L	E	E	N	P	M	R	I	L	D	S	K	S	E	R	D	Q	A	L	L	K	E	L	G	V	R	P	M	L	D	F	L	G	E	E	A	R	A	H	L	K	E	V	E	R
Template Known Secondary structure																							G	G	G	G	G	G	S								T	T	S		G	G	G	G	T	T			S											T				G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L	V	Q	A	V	N	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	E	R	L	S	V	P	Y	E	L	E	P	A	L	V	R	G	L	D	Y	Y	V	R	T	A	F	E	V	H	H	E	E	I	G	A	Q	S	A	L	G	G	G	G	R	Y	D	G	L	S	E	L	L	G	G	P	R	V	P	G	V	G	F	A	F	G	V	E	R	V	A	L	A	L	E	A	E	G	F	G
Template Known Secondary structure						T	T							S					S		T	T			S								S	S	S	S	S											T	T					T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E	S	E	V	A	N	G	T	A	V	V	K	D	L
Query Conservation
Alig confidence																																	.	.	.
Template Conservation																																	.	.	.
Template Sequence		L	P	E	E	K	G	P	D	L	Y	L	I	P	L	T	E	E	A	V	A	E	A	F	Y	L	A	E	A	L	R	P	.	.	.	R	L	R	A	E	Y	A	L	A	P	R	K	P	A	K	G	L	E	E	A	L	K	R	G	A	A	F	A	G	F	L	G	E	D	E	L	R	A	G	E	V	T	L	K	R	L
Template Known Secondary structure									S						S	S															T	T	.	.	.	T	S						S	S														T	T		S													T							T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R	T	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	G	E	Q	V	R	L	S	R	E	E	V	P	G	Y	L	L	Q	A	L	G
Template Known Secondary structure		T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.