Job Description P24215 Confidence 99.84% Date Thu Jan 5 11:41:18 GMT 2012 Rank 16 Aligned Residues 227 % Identity 17% Template c3ngfA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis Resolution 1.80 Å

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		7	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.
Predicted Secondary structure										.	.																																																													.	.	.	.	.
Query SS confidence										.	.																																																													.	.	.	.	.
Query Sequence		W	Y	G	P	N	D	P	V	.	.	S	L	A	D	V	R	Q	A	G	A	T	G	V	V	T	A	L	H	H	I	P	N	G	E	V	W	S	V	E	E	I	L	K	R	K	A	I	I	E	D	A	G	L	V	W	S	V	V	E	S	V	P	I	H	E	D	I	K	T	H	.	.	.	.	.	T	G	N	Y	E
Query Conservation										.	.																																																													.	.	.	.	.
Alig confidence										.	.														.	.	.	.	.														.	.	.																											.	.	.	.	.
Template Conservation																									.	.	.	.	.														.	.	.
Template Sequence		T	M	F	N	E	V	P	F	L	E	R	F	R	L	A	A	E	A	G	F	G	G	V	.	.	.	.	.	E	F	L	F	P	Y	D	F	D	A	D	V	I	.	.	.	A	R	E	L	K	Q	H	N	L	T	Q	V	L	F	N	M	P	P	G	D	W	A	A	G	E	R	G	M	A	A	I	S	G	R	E	Q
Template Known Secondary structure		T	S		T	T	S												T	T		S			.	.	.	.	.			S			T	T	S						.	.	.							T	T											S		T	T	T	T			B		T	T		T	T
Template Predicted Secondary structure																									.	.	.	.	.														.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	I	A	N	Y	Q	Q	T	L	R	N	L	A	Q	C	G	I	R	T	V	C	Y	N	F	M	P	V	L	D	W	T	R	T	D	L	E	Y	V	L	P	D	G	S	K	A	L	R	F	D	Q	I	E	F	A	A	F	E	M	H	I	L	K	R	P	G	A	E	A	D	Y	T	E	E	E	I	A	Q	A	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	R	D	N	V	D	I	A	L	H	Y	A	L	A	L	D	C	R	T	L	H	A	M	S	G	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T								B		B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	F	A	T	M	S	D	E	D	K	A	R	L	T	R	N	I	I	A	G	L	P	G	A	E	E	G	Y	T	L	D	Q	F	R	K	H	L	E	L	Y	K	D	I	D	K	A	K	L	R	E	N	F	A	V	F	L	K	A	I	I	P	V	A	E	E	V	G	V	R	M	A	V	H	P	D	D	P	P	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	D	R	K	A	C	E	E	T	F	I	E	N	F	R	Y	A	A	D	K	L	A	P	H	G	I	T	V	L	V	E	P	L	N	T	R	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																					G	G	G	T										T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																											110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	I	L	G	L	P	R	I	V	S	T	I	E	D	M	Q	W	M	V	D	T	V	N	S	M	A	N	G	F	T	M	C	T	G	S	Y	G	V	R	A	D	N	D	L	V	D	M	I	K	Q	F	G	P	R	I	Y	F	T	H	L	R	S	T	M	R	E	D	N	P	K	T	F	H	E	A	A	H	L	N
Query Conservation		.
Alig confidence		.				.	.	.	.																																	.																									.	.			.	.	.	.	.	.
Template Conservation						.	.	.	.																																	.																									.	.			.	.	.	.	.	.
Template Sequence		M	P	G	Y	.	.	.	.	F	I	V	H	Q	L	E	A	V	G	L	V	K	R	V	N	R	P	N	V	A	V	Q	L	D	L	Y	H	A	Q	I	M	.	D	G	D	L	T	R	L	I	E	K	M	N	G	A	F	S	H	V	Q	I	A	S	V	P	.	.	D	R	.	.	.	.	.	.	H	E	P	D	E
Template Known Secondary structure		S	T	T	B	.	.	.	.	S																	T	T														.	T										T	T	T	S									T	T	.	.	T		.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure						.	.	.	.																																	.																									.	.			.	.	.	.	.	.
Template SS confidence
		149	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210							.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	V	D	M	Y	E	V	V	K	A	I	V	E	E	E	H	R	R	K	A	E	G	K	E	D	L	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	L	N	Y	P	Y	L	F	S	V	L	E	S	V	G	Y	R	G	W	V	G	C	E	Y	N	P	R	G
Template Known Secondary structure		S	S													T	T			S									S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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