Job Description P24215 Confidence 98.71% Date Thu Jan 5 11:41:18 GMT 2012 Rank 36 Aligned Residues 250 % Identity 16% Template c2i56A_ PDB info PDB header:isomerase, metal-binding protein Chain: A: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.							.	.	.	.	80	.	.
Predicted Secondary structure								.																																																.	.	.	.	.	.								.	.	.	.	.	.
Query SS confidence								.																																																.	.	.	.	.	.								.	.	.	.	.	.
Query Sequence		L	A	D	V	R	Q	.	A	G	A	T	G	V	V	T	A	L	H	H	I	P	N	G	E	V	W	S	V	E	E	I	L	K	R	K	A	I	I	E	D	A	G	L	V	W	S	V	V	E	S	V	P	I	H	.	.	.	.	.	.	E	D	I	K	T	H	T	.	.	.	.	.	.	G	N	Y	E	Q	W	I
Query Conservation								.																																																.	.	.	.	.	.								.	.	.	.	.	.
Alig confidence								.									.	.					.	.	.	.																														.	.	.	.	.	.								.	.	.	.	.	.
Template Conservation																	.	.					.	.	.	.
Template Sequence		C	A	V	I	Q	Q	L	T	R	A	T	P	N	V	S	.	.	L	H	I	P	.	.	.	.	W	D	K	A	D	P	K	E	L	K	A	R	G	D	A	L	G	L	G	F	D	A	M	N	S	N	T	F	S	D	A	P	G	Q	A	H	S	Y	K	Y	G	S	L	S	H	T	N	A	A	T	R	A	Q	A	V
Template Known Secondary structure										S							.	.		B	T	T	.	.	.	.	T	T		S													T											S	S			T	T		S	S			T	T		S	T	T		S	S
Template Predicted Secondary structure																	.	.					.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		A	N	Y	Q	Q	T	L	R	N	L	A	Q	C	G	I	R	T	V	C	.	.	.	.	.	.	Y	N	F	M	P	V	L	D	W	T	R	T	D	L	E	Y	V	L	P	D	G	S	K	A	L	R	F	D	Q	I	E	F	A	A	F	E	M	H	I	L	K	R	P	G	A	E	A	D	Y	T	E	E	E	I	A
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	H	N	L	E	C	I	E	I	G	K	A	I	G	S	K	A	L	T	V	W	I	G	D	G	S	N	F	P	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T													S	S	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	A	E	R	F	A	T	M	S	D	E	D	K	A	R	L	T	R	N	I	I	A	G	L	P	G	A	E	E	G	Y	T	L	D	Q	F	R	K	H	L	E	L	Y	K	D	I	D	K	A	K	L	R	E	N	F	A	V	F	L	K	A	I	I	P	V	A	E	E	V	G	V	R	M	A	V	H	P	D	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.													.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	F	T	R	A	F	E	R	Y	L	S	A	M	A	E	I	Y	K	.	G	L	P	D	D	W	K	L	F	S	E	H	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																			.	T			T	T								.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.													.	.
Template SS confidence
																																																190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		P	P	R	P	I	L	G	L	P	R	I	V	S	T	I	E	D	M	Q	W	M	V	D	T	V	N	S	M	A	N	G	F	T	M	C	T	G	S	Y	G	V	R	A	D	N	D	L	V	D	M	I	K	Q	F	G	.	.	P	R	I	Y	F	T	H	L	R	S	T	M	R	E	D	N	P	K	T	F	H	E	A
Query Conservation																																																									.	.
Alig confidence																												.													.	.															.	.									.	.	.	.	.	.			.
Template Conservation																												.													.	.																									.	.	.	.	.	.			.
Template Sequence		K	M	Y	E	P	A	F	Y	S	T	V	V	Q	D	W	G	T	N	Y	L	I	A	Q	T	L	G	.	P	K	A	Q	C	L	V	D	L	G	H	H	.	.	A	P	N	T	N	I	E	M	I	V	A	R	L	I	Q	F	G	K	L	G	G	F	H	F	.	.	.	.	.	.	N	D	.	S	K	Y	G	D	D
Template Known Secondary structure			S	S	S	S		S	S			T	T		S													.	T	T							G	G	G	S	.	.		T	T													T	T								.	.	.	.	.	.		B	.		S	S	S	S
Template Predicted Secondary structure																												.													.	.																									.	.	.	.	.	.			.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.							.	.		.	.	.	.	.	290
		315	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																									.	.
Query SS confidence										.	.	.																																									.	.
Query Sequence		A	H	L	N	G	D	V	D	.	.	.	M	Y	E	V	V	K	A	I	V	E	E	E	H	R	R	K	A	E	G	K	E	D	L	I	P	M	R	P	D	H	G	H	Q	M	L	D	D	L	K	K	.	.	K	T	N	P	G	Y	S	A	I	G	R	L	K	G	L	A	E	V	R	G	V	E	L	A	I	Q	R
Query Conservation										.	.	.																																									.	.
Alig confidence										.	.	.																.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	D	A	G	A	I	E	P	Y	R	L	F	L	V	F	N	E	L	V	D	A	E	A	R	G	.	.	.	.	.	.	.	.	.	.	V	K	G	F	H	P	A	H	M	I	D	Q	S	H	N	V	T	D	P	I	E	S	L	I	N	S	A	N	E	I	R	R	A	Y	A	Q	A	L	L	V	D	R	A	A
Template Known Secondary structure			B		T	T	S	S																		T	T	.	.	.	.	.	.	.	.	.	.		T	T												S	S	S																							S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.											.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions