|   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | V | K | E | K | L | Q | I | A | L | A | L | E | R | M | G | V | D | V | M | E | V | G | F | P | V | S | S | P | G | D | F | E | S | V | Q | T | I | A | R | Q | V | K | N | S | R | V | C | A | L | A | R | C | V | E | K | D | I | D | V | A | A | E | S | L | K | V | A | E | A | F | R | I | H | T | F | I | A | T |
Query Conservation |   |
  |
|   |
|   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |
|   |
|
|   |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |
|
|
|   |
|   |
|
|
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   | . |
|   |   |
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |
Template Sequence |   |
A | S | A | E | E | T | L | A | F | L | A | P | F | Q | Q | E | . |
P | L | F | V | K | V | G | M | E | L | F | Y | Q | E | G | P | S | I | V | K | Q | L | K | E | R | N | C | E | L | F | L | D | L | K | L | H | D | I | P | T | T | V | N | K | A | M | K | R | L | A | S | L | G | V | D | L | V | N | V | H | A | A | G |
Template Known Secondary structure |   |
S | S |  |  |  |  |  |  |  | T | G | G | G | T | T | S | . |
|
|  |  |  |  |
|  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  | G | G | G |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 140 | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | P | M | H | I | A | T | K | L | R | S | T | L | D | E | V | I | E | R | A | I | Y | M | V | K | R | A | R | N | Y | T | D | D | . |
. |
. |
. |
. |
. |
. |
V | E | F | S | C | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | A | G | R | T | P | I | A | D | L | A | R | V | V | E | A | A | I | N | A | G | A |
Query Conservation |   |
|
|   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   | . | . | . | . | . | . | . |
|   |   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|
|
Alig confidence |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
Template Sequence |   |
G | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | M | M | Q | A | A | L | E | G | L | E | E | G | T | P | A | G | K | K | R | P | S | L | I | A | V | T | Q | L | T | S | T | S | E | Q | I | M | K | D | E | L | L | I | E | K | S | L | I | D | T | V | V | H | Y | S | K | Q | A | E | E | S | G | L |
Template Known Secondary structure |   |
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T | S |
|
|
|  |  |  |  |  |
| S |
| T | T |
|
|  |  |  |  |  |  | T | S |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | T | I | N | I | P | D | T | V | G | Y | T | M | P | F | E | F | A | G | I | I | S | G | L | Y | E | R | V | P | N | I | D | K | A | I | I | S | V | . |
. |
. |
. |
. |
. |
. |
H | T | H | D | D | L | G | L | A | V | G | N | S | L | A | A | V | H | A | G | A | R | Q | V |
Query Conservation |   |
|   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |
|   |   | . | . | . | . | . | . | . |
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|   |   |   |   | . | . | . |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |
|
|
|   |
|
Template Sequence |   |
D | G | V | V | C | S | V | H | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | K | A | I | Y | Q | A | V | S | . |
. |
. |
P | S | F | L | T | V | T | P | G | I | R | M | S | E | D | A | A | N | D | Q | V | R | V | A | T | P | A | I | A | R | E | K | G | S | S | A | I |
Template Known Secondary structure |   |
S |  |  |  |
|
| G | G | G | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  | T | T | T | S |
| . | . | . | T | T |
|  |  |  |  |
|
| B |
|
| T | T | S |
|
| T | T |
| S | S |
| B |
|  |  |  |  |  |  | T | T |
| S |  |  |
Template Predicted Secondary structure |   |
|  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
157 | . | . | 160 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 170 | . | . | . | . | |
|
|
. | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . |
  |