Return to main results Retrieve Phyre Job Id

Job DescriptionP09151
Confidence100.00%DateThu Jan 5 11:01:59 GMT 2012
Rank2Aligned Residues362
% Identity28%Templatec3ivuB_
PDB info PDB header:transferaseChain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og
Resolution2.72 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKD
Query Conservation 
  

 
 






 
  
   
 
 

 

  
   

  



 
 

  
 
 
  
        
 

 
    
Alig confidence 















































































Template Conservation      
 
 






 
  
     
 
  

  
   

  



 
       
 
  
        
    
    
Template Sequence  RVNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVASEQSRQDCEAICKLGLKCKILTHIRCHMDD
Template Known Secondary structure 
TTS

TTTGGGGSTT



T
S

GGG
TS

SSS
Template Predicted Secondary structure 



































Template SS confidence 















































































   31........40.........50.........60.........70.........80.........90.........100.........110
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  IDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN
Query Conservation 

 
 


   
   
 
    

 
       
 

        
  

  
  
    

  
   
 
      
  
Alig confidence 





....















..



















































Template Conservation 
  
  .... 
   
 
    
   ..          
      
  

  
  
     
  
               
Template Sequence  ARVAVE. . . . TGVDGVDVVIGTSQYL. . RKYSHDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDK
Template Known Secondary structure  ....TT
S

GGG..




TT

TTGGGS
Template Predicted Secondary structure  ....





..













Template SS confidence 















































































   111..... ...120.........130.. .......140.........150.........160.........170.........180....
 
   161........170.........180.........190.........200.........210.........220.........230.........240
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS
Query Conservation   


 
 
 

 
   
  
  

  
   

    
 
  
 


 










 


  

 

 








 
Alig confidence 






























....












































Template Conservation   


 
 
 

 
   
     

  
    .... 
 
  
 


 


 

 



 


  

 

 








 
Template Sequence  IGVNRVGIADTVGCATPRQVYDLIRTLRGVV. . . . SCDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGERNGITP
Template Known Secondary structure 

SSSS



....SSB
TTS
T

BGGG
SSTT
B
B
Template Predicted Secondary structure 













....
























Template SS confidence 















































































   187..190.........200.........210....... ..220.........230.........240.........250.........260..
 
   241........250.........260.........270.........280.........290.........300.........310.........320
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIG
Query Conservation 

 

  
       
  
 


  
  

  
    
       



  

 
 



 


 
    

   
  

Alig confidence 










.


















































.......









Template Conservation 

 

  
   .        


  
   
  
    
  
    



  

 
 



   .......

   
  

Template Sequence  LGALLARMYVT. DREYITHKYKLNQLRELENLVADAVEVQIPFNNYITGMCAFTHKAGIHAST. . . . . . . YEILKPEDFG
Template Known Secondary structure  .
S
GGGT



TT
TTTSTTTT
STT


.......


S
GGGGT
Template Predicted Secondary structure 
.






























.......






Template SS confidence 















































































   263......270... ......280.........290.........300.........310.........320.... .....330....
 
   321........330.........340.........350.........360.........370.........380.
Predicted Secondary structure 



















Query SS confidence 




























































Query Sequence  LNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFI
Query Conservation         
   

   
   
   
          
   

                    
Alig confidence 












































.














Template Conservation             

   
   
   
              

  
 .       

     
Template Sequence  MSRYVHVGSRLTGWNAIKSRAEQLNLHLTDAQAKELTVRIKKLAD. VRTLAMDDVDRVLRE
Template Known Secondary structure 




S


TT



T.TS


TTTT
Template Predicted Secondary structure 













.



Template SS confidence 




























































   342.......350.........360.........370.........380...... ...390.........400.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions