Job Description P09151 Confidence 62.41% Date Thu Jan 5 11:01:59 GMT 2012 Rank 296 Aligned Residues 251 % Identity 17% Template c3eb2A_ PDB info PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution Resolution 2.04 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																											.	.	.	.	.																			.	.	.
Query SS confidence																											.	.	.	.	.																			.	.	.
Query Sequence		S	L	S	V	K	E	K	L	Q	I	A	L	A	L	E	R	M	G	V	D	V	M	E	V	G	.	.	.	.	.	F	P	V	S	S	P	G	D	F	E	S	V	Q	T	I	A	R	Q	.	.	.	V	K	N	S	R	V	C	A	L	A	R	C	V	E	K	D	I	D	V	A	A	E	S	L	K	V	A	E	A
Query Conservation																											.	.	.	.	.																			.	.	.
Alig confidence																											.	.	.	.	.																			.	.	.
Template Conservation
Template Sequence		R	V	R	A	D	V	M	G	R	L	C	D	D	L	I	Q	A	G	V	H	G	L	T	P	L	G	S	T	G	E	F	A	Y	L	G	T	A	Q	R	E	A	V	V	R	A	T	I	E	A	A	Q	R	R	V	P	V	V	A	G	V	A	S	T	S	V	A	D	A	V	A	Q	A	K	L	Y	E	K	L	G	A
Template Known Secondary structure			B															T	T		S		B	B	T	T	S	G	G	G	T	G	G	G																		T	T	S	S		B							S	S															T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		F	R	I	H	T	F	I	A	T	S	P	M	H	I	A	T	K	L	R	S	T	L	D	E	V	I	E	R	A	I	Y	M	V	K	R	A	R	N	Y	T	D	D	V	E	F	S	C	E	D	A	G	R	T	.	.	P	I	A	D	L	A	R	V	V	E	A	A	I	N	A	G	A	T	T	I	N	I	P	D	T
Query Conservation																																																							.	.
Alig confidence												.	.	.	.	.	.	.																				.	.																.	.												.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.																				.	.																													.	.	.	.	.
Template Sequence		D	G	I	L	A	I	L	E	A	Y	.	.	.	.	.	.	.	F	P	L	K	D	A	Q	I	E	S	Y	F	R	A	I	A	D	A	V	.	.	E	I	P	V	V	I	Y	T	N	P	Q	F	Q	R	S	D	L	T	L	D	V	I	A	R	L	A	E	H	.	.	.	.	.	P	R	I	R	Y	I	K	D	A
Template Known Secondary structure		S									S	.	.	.	.	.	.	.	S																			.	.	S	S								T	T	T		S	S												T	S	.	.	.	.	.	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.																				.	.																													.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	Y	T	M	P	F	E	F	A	G	I	I	S	G	L	Y	E	R	V	P	N	I	D	K	A	I	I	S	V	H	T	H	D	D	L	G	L	A	V	G	N	S	L	A	A	V	H	A	G	A	R	Q	V	E	G	A	M	N	G	I	G	E	R	A	G	N	C	S	L	E	E	V	I	M	A	I	K	V	R
Query Conservation
Alig confidence						.	.														.	.	.	.	.	.	.	.										.	.	.	.	.												.	.	.							.	.	.	.
Template Conservation						.	.														.	.	.	.	.	.	.	.										.	.	.	.	.												.	.	.							.	.	.	.
Template Sequence		S	T	N	T	.	.	G	R	L	L	S	I	I	N	R	C	G	D	A	.	.	.	.	.	.	.	.	L	Q	V	F	S	A	S	A	H	.	.	.	.	.	I	P	A	A	V	M	L	I	G	G	V	.	.	.	G	W	M	A	G	P	.	.	.	.	A	C	I	A	P	R	Q	S	V	A	L	Y	E	L	C
Template Known Secondary structure		S	S			.	.											G	G	G	.	.	.	.	.	.	.	.	S						T	T	S	.	.	.	.	.								T	T			.	.	.					G	G	.	.	.	.	G	G	T
Template Predicted Secondary structure						.	.														.	.	.	.	.	.	.	.										.	.	.	.	.												.	.	.							.	.	.	.
Template SS confidence
		167	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	I	L	N	V	H	T	A	I	N	H	Q	E	I	W	R	T	S	Q	L	V	S	Q	I	C	N	M	P	I	P	A	N	K	A	I	V	G	S	G	A	F	A	H	S	S	G	I	H	Q	D	G	V	L	K	N	R	E	N	Y	E	I	M	T	P	E	S	I	G	L	N	Q	I	Q	L	N	L	T	S	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	Q	.	.	.	.	.	.	.	R	W	D	E	A	L	M	L	Q	R	K	L	W	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	A	F	A	K	F	N	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	.	.	.	.	.	.	.													T			.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.								.	.	230	.	.	.	.	.	.	.	.	.	240	.	.														.	.	.	.	.	.	.	250	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.											.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	R	A	A	V	K	H	R	M	D	E	M	G	Y	K	.	.	.	.	.	.	.	.	.	.	E	S	E	Y	N	L	D	N	L	Y	D	A	F	L	K	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	A	C	I	K	A	G	L	A	L	Q	G	Y	D	V	G	D	P	I	P	P	Q	A	A	L	T	A	E	E	R	K	A	V	E	K	V	L	A	E	I
Template Known Secondary structure		.	.	.										T	T								T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions