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Job DescriptionP09151
Confidence31.81%DateThu Jan 5 11:01:59 GMT 2012
Rank424Aligned Residues103
% Identity10%Templatec3dhuC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90........ .100.........110.........120.........130........
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Query Sequence  AESLKVAEAFRIHT. . . . . . . . . . . . . . . . . . FIATSPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEF. . . . . . . .
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Template Sequence  LQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGT. . . . . LADFKALTDRAHELGMKVMLDIVYNHTS
Template Known Secondary structure  T
S


S
B

TT

TTT

TTSBS
TTS

GGG

.....TT


S
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   35....40.........50.........60.........70.........80. ........90.........100.........
 
   139140.........150.........160.........170.........180......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEFAGIISG
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Template Sequence  PDSVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQ. FVDGYRC. DVAPLVPLDFWLEARKQ
Template Known Secondary structure  TTS
GGGB
B
TTS
B

S
TT
TT
B
TT
TTT.T
S.TTGGGS
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   110.........120.........130.........140.........150.........160... ......170 .........180.......
 
   187..190....
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Query Sequence  LYERVPNI
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Template Sequence  VNAKYPET
Template Known Secondary structure 
TT
Template Predicted Secondary structure 


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   188.190.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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