Job Description P09151 Confidence 91.80% Date Thu Jan 5 11:01:59 GMT 2012 Rank 136 Aligned Residues 271 % Identity 14% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																											.	.	.	.	.																			.	.	.
Query SS confidence																											.	.	.	.	.																			.	.	.
Query Sequence		S	L	S	V	K	E	K	L	Q	I	A	L	A	L	E	R	M	G	V	D	V	M	E	V	G	.	.	.	.	.	F	P	V	S	S	P	G	D	F	E	S	V	Q	T	I	A	R	Q	.	.	.	V	K	N	S	R	V	C	A	L	A	R	C	V	E	K	D	I	D	V	A	A	E	S	L	K	V	A	E	A
Query Conservation																											.	.	.	.	.																			.	.	.
Alig confidence																											.	.	.	.	.																			.	.	.
Template Conservation
Template Sequence		Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A
Template Known Secondary structure		S	B															T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S								S	S																T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	I	H	T	F	I	A	T	S	P	M	H	I	A	T	K	L	R	S	T	L	D	E	V	I	E	R	A	I	Y	M	V	K	R	A	R	N	Y	T	D	D	V	E	F	S	C	E	D	A	G	R	T	P	I	A	D	L	A	R	V	V	E	A	A	I	N	A	G	A	T	T	I	N	I	P	D	T	V	G
Query Conservation
Alig confidence												.	.	.	.	.	.	.																				.	.																				.	.
Template Conservation												.	.	.	.	.	.	.																				.	.																				.	.
Template Sequence		D	G	I	V	V	I	N	P	Y	Y	.	.	.	.	.	.	.	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	.	.	T	L	P	V	X	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	.	.	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	K	D	T	I	D
Template Known Secondary structure		S								S	S	.	.	.	.	.	.	.	S																			.	.	S	S												S						.	.											T	T									S
Template Predicted Secondary structure												.	.	.	.	.	.	.																				.	.																				.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.								120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	M	P	F	E	F	A	G	I	I	S	G	L	Y	E	R	V	P	N	I	D	K	A	I	I	S	V	H	T	H	D	D	L	G	L	A	V	G	N	S	L	A	A	V	H	A	G	A	R	Q	V	E	G	A	M	N	G	I	G	E	R	A	G	N	C	S	L	E	E	V	I	M	A	I	K	V	R	K	D
Query Conservation
Alig confidence		.	.																			.	.	.	.	.									.	.	.	.	.												.	.	.								.	.	.	.
Template Conservation		.	.																			.	.	.	.	.									.	.	.	.	.												.	.	.								.	.	.	.
Template Sequence		.	.	S	V	A	H	L	R	S	X	I	H	T	V	K	G	A	H	P	H	.	.	.	.	.	F	T	V	L	C	G	Y	D	.	.	.	.	.	D	H	L	F	N	T	L	L	L	G	G	.	.	.	D	G	A	I	S	A	S	.	.	.	.	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D
Template Known Secondary structure		.	.																	T	T	.	.	.	.	.						S	S	G	.	.	.	.	.	G	G							T	T		.	.	.						G	G	.	.	.	.	G	T	T														T
Template Predicted Secondary structure		.	.																			.	.	.	.	.									.	.	.	.	.												.	.	.								.	.	.	.
Template SS confidence
				179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	N	V	H	T	A	I	N	H	Q	E	I	W	R	T	S	Q	L	V	S	Q	I	C	N	M	P	I	P	A	N	K	A	I	V	G	S	G	A	F	A	H	S	S	G	I	H	Q	D	G	V	L	K	N	R	E	N	Y	E	I	M	T	P	E	S	I	G	L	N	Q	I	Q	L	N	L	T	S	R	S	G
Query Conservation
Alig confidence			.	.	.	.	.	.	.																																																.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.																																																.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	D	V	A	K	A	A	G	Y	H	Q	T	L	L	Q	I	P	Q	X	Y	Q	L	D	T	P	F	V	N	V	I	K	E	A	I	V	L	C	G	R	P	V	S	T	H	V	L	P	P	.	.	A	S	P	L	D	E	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	.	.	.	.	.	.	.															G	G	G	G	G	G	G	S	S	S												T	T						B			T	T	.	.	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.																																																.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240								.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	V	K	H	R	M	D	E	M	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	Q	L	K	T	L	L	Q	Q	L	K	L
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions