 |
Job Description | P09151 | Confidence | 58.67% | Date | Thu Jan 5 11:01:59 GMT 2012 |
Rank | 312 | Aligned Residues | 76 |
% Identity | 25% | Template | c2pcqA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:putative dihydrodipicolinate synthase; |
PDBTitle: crystal structure of putative dihydrodipicolinate synthase (ttha0737)2 from thermus thermophilus hb8
|
Resolution | 2.10 Å |
|
 |
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | |
|
|
. | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | T | P | I | A | D | L | A | R | V | V | E | A | A | I | N | A | G | A | T | T | I | N | I | P | D | T | V | G | Y | . |
. |
. |
T | M | P | F | E | F | A | G | I | I | S | G | L | Y | E | R | V | P | N | I | D | K | A | I | I | S | V | H | T | H | D | D | L | G | L | A | V | G | N | S | L | A | A | V | H | A |
Query Conservation |   |
  |
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |
|   |
|
|   |
|   | . | . | . |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   | . |
|   |   |
|
|   |
|
|   |
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |
| . | . | . | . |
|
|   |
|
| . |   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
Template Sequence |   |
G | R | L | D | E | E | A | F | R | E | L | A | Q | A | . |
L | E | P | L | V | D | G | L | L | V | Y | G | S | N | G | E | G | V | H | L | T | P | E | E | R | A | R | G | L | R | A | L | R | P | R | K | P | . |
. |
. |
. |
F | L | V | G | L | . |
X | E | E | T | L | P | Q | A | E | G | A | L | L | E | A | K | A | A |
Template Known Secondary structure |   |
|
| B |
|  |  |  |  |  |  |  |  |  |  | . |  | G | G | G | S | S |
|
|  |  | T |
| T | T | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  | T |
|
|
| S | S |
| . | . | . | . |
|  |  |  |  | . |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | |
|
|
|
. | . | . | . | . | |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
  |
  |   |
221 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
G | A | R | Q | V |
Query Conservation |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
Template Sequence |   |
G | A | X | A | L |
Template Known Secondary structure |   |
T |
| S |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
88 | . | 90 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|