Job Description P09151 Confidence 76.95% Date Thu Jan 5 11:01:59 GMT 2012 Rank 238 Aligned Residues 141 % Identity 10% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.											.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Query Sequence		E	K	D	I	D	V	A	A	E	S	L	K	V	A	E	A	F	R	I	H	T	.	.	.	.	.	.	.	.	.	.	F	I	A	T	S	P	M	H	I	A	T	K	L	R	S	T	L	D	E	V	I	E	R	A	I	Y	M	V	K	R	A	R	N	Y	T	.	.	.	.	.	D	D	V	E	F	S	C	E	D
Query Conservation																							.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T
Template Known Secondary structure															T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		143	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.												.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	R	.	.	.	T	P	I	A	D	L	A	R	V	V	E	A	A	I	N	A	G	A	T	T	I	N	I	.	.	.	.	.	.	.	.	.	.	.	P	D	T	V	G	Y	T	M	P	F	E	F	A	G	I	I	S	G	L	Y	E	R	V	P	N	I	D	K	A	I	I	S	V	H	T	H	D	D	L	G
Query Conservation					.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.													.
Template Conservation																																																																	.	.	.	.													.
Template Sequence		V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	.	.	.	.	K	K	P	V	L	G	V	G	R	Y	T	D	.
Template Known Secondary structure		S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		.	.	.	.	S	S						S					.
Template Predicted Secondary structure																																																																	.	.	.	.													.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	A	V	G	N	S	L	A	A	V	H	A	G	.	A	R	Q	V
Query Conservation															.
Alig confidence		.	.												.
Template Conservation		.	.
Template Sequence		.	.	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I
Template Known Secondary structure		.	.										T	T	S		S	B
Template Predicted Secondary structure		.	.
Template SS confidence
				303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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