Job Description P22564 Confidence 100.00% Date Thu Jan 5 11:38:58 GMT 2012 Rank 4 Aligned Residues 295 % Identity 45% Template c1yoeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose Resolution 1.78 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		R	L	P	I	F	L	D	T	D	P	G	I	D	D	A	V	A	I	A	A	A	I	F	A	P	E	L	D	L	Q	L	M	T	T	V	A	G	N	V	S	V	E	K	T	T	R	N	A	L	Q	L	L	H	F	W	N	A	.	E	I	P	L	A	Q	G	A	A	V	P	L	V	R	A	P	R	D	A	A	S	V
Query Conservation																																																											.
Alig confidence																																																											.															.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		A	L	P	I	L	L	D	C	D	P	G	H	D	D	A	I	A	I	V	L	A	L	A	S	P	E	L	D	V	K	A	I	T	S	S	A	G	N	Q	T	P	E	K	T	L	R	N	V	L	R	M	L	T	L	L	N	R	T	D	I	P	V	A	G	G	A	V	K	P	L	M	R	.	.	.	.	.	E	L	I
Template Known Secondary structure												S												T		T	T										S	S	S	S																T	T		T	T	S							S	S		S	S	S	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	E	S	G	M	A	G	Y	D	F	V	E	H	N	R	K	P	L	G	I	P	A	F	L	A	I	R	D	A	L	M	R	A	P	E	P	V	T	L	V	A	I	G	P	L	T	N	I	A	L	L	L	S	Q	C	P	E	C	K	P	Y	I	R	R	L	V	I	M	G	G	S	A	G	R	G	N	C	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	E	S	G	L	D	G	P	A	L	P	E	P	T	F	A	P	Q	N	C	T	A	V	E	L	M	A	K	T	L	R	E	S	A	E	P	V	T	I	V	S	T	G	P	Q	T	N	V	A	L	L	L	N	S	H	P	E	L	H	S	K	I	A	R	I	V	I	M	G	G	A	M	G	L	G	N	W	T	P
Template Known Secondary structure						S	S		S	S						S	S				S	S														S	S								S		S											G	G	G	G	G	G											S	S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		N	A	E	F	N	I	A	A	D	P	E	A	A	A	C	V	F	R	S	G	I	E	I	V	M	C	G	L	D	V	T	N	Q	A	I	L	T	P	D	Y	L	S	T	L	P	Q	L	N	.	R	T	G	K	M	L	H	A	L	F	S	H	Y	R	S	G	S	M	Q	S	G	L	R	M	H	D	L	C	A	I	A
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		A	A	E	F	N	I	Y	V	D	P	E	A	A	E	I	V	F	Q	S	G	I	P	V	V	M	A	G	L	D	V	T	H	K	A	Q	I	H	V	E	D	T	E	R	F	R	A	I	G	N	P	V	S	T	I	V	A	E	L	L	D	F	F	L	E	K	W	G	F	V	G	A	P	L	H	D	P	C	T	I	A
Template Known Secondary structure		S																	T	S	S	S											T	T	S															S																				S	S					T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	V	R	P	D	L	F	T	L	K	P	C	F	V	A	V	E	T	Q	G	E	F	T	S	G	T	T	V	V	D	I	D	G	C	L	G	K	P	A	N	V	Q	V	A	L	D	L	D	V	K	G	F	Q	Q	W	V	A	E	V	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	L	K	P	E	L	F	T	S	V	E	R	W	V	G	V	E	T	Q	G	K	Y	T	Q	G	M	T	V	V	D	Y	Y	Y	L	T	G	N	K	P	N	A	T	V	M	V	D	V	D	R	Q	G	F	V	D	L	L	A	D	R	L	K
Template Known Secondary structure						G	G	G													S		S	S		T	T						T	T			S	S																									G
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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