Return to main results Retrieve Phyre Job Id

Job DescriptionP37326
Confidence99.93%DateThu Jan 5 11:55:12 GMT 2012
Rank2Aligned Residues263
% Identity13%Templated1p7da_
SCOP infoDNA breaking-rejoining enzymes DNA breaking-rejoining enzymes Lambda integrase-like, catalytic core
Resolution2.95

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100...... ...110.........120.........130.........140.........150.........160.........
Predicted Secondary structure  .









Query SS confidence 















.






























































Query Sequence  NSFSAIYKEWYEHKKQ. VWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR
Query Conservation                  .     
                
      
                                 
Alig confidence 















.














.








...


































Template Conservation 

  
    
         
  
   
   
 .         ... 

   
      
               
     
Template Sequence  MTLHSWLDRYEKILASRGIKQKTLINYMSKIK. AIRRGLPDA. . . PLTTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFR
Template Known Secondary structure 

T
TT

.S
S
...


TT
Template Predicted Secondary structure 





.



...





Template SS confidence 















































































   74.....80.........90.........100..... ....110.... .....120.........130.........140.........
 
   170.........180.........190.........200.........210.........220.........230.........240.........
Predicted Secondary structure 


















































Query SS confidence 















































































Query Sequence  YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFE
Query Conservation                                                                
 
               
Alig confidence 









































.....
































Template Conservation                                            .....          
   

 
  

  
   

   
Template Sequence  EAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAES. . . . . SPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDG
Template Known Secondary structure  TTS
S

TTTTS












GGG.....S



TT
BGGGB
SS
Template Predicted Secondary structure 



























.....









Template SS confidence 















































































   153......160.........170.........180.........190.... .....200.........210.........220.......
 
   250.........260....... ..270.........280.........290.........300.........310......... 320...
Predicted Secondary structure 














...

























...
Query SS confidence 

















. . .



















































. . .



Query Sequence  NRIITIDASVMKGRKIHV. . . VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEG. . . LESG
Query Conservation                    ...                                             
  
   ...  
 
Alig confidence 

















...



















































...



Template Conservation     
                                                                            
Template Sequence  YLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTF
Template Known Secondary structure 
TTT

TT
TTTTT
SSBSSB
TTS
B

T


SSS


T
Template Predicted Secondary structure 











































Template SS confidence 















































































   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   324.....330.........340.........350.........360...
Predicted Secondary structure 










Query SS confidence 







































Query Sequence  HGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHA
Query Conservation 
 



 

 
   

    
   


     
   
 
 
Alig confidence 








.





























Template Conservation 
 




  .
   
     
   


    

  
  
 
Template Sequence  HELRSLSAR. LYEKQISDKFAQHLLGHKSDTMASQRDDRG
Template Known Secondary structure  T.T


SS








TT
Template Predicted Secondary structure 
.







Template SS confidence 







































   308.310...... ...320.........330.........340......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions