Job Description P37326 Confidence 82.60% Date Thu Jan 5 11:55:12 GMT 2012 Rank 33 Aligned Residues 136 % Identity 16% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.												.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	L	I	A	T	K	V	L	R	Y	T	A	L	R	T	K	E	.	.	.	.	.	.	.	.	.	.	.	L	R	S	M	L	W	K	N	V	D	F	E	N	R	I	I	T	I	D	A	S	V	M	K	G	R	K	I	H	V	V	P	M	S	D	Q	V	V	E	L	L	T	T	L	S	S	I	T	K	P	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P
Template Known Secondary structure																															S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T										T	T		T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																				340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	F	V	F	A	G	R	N	D	K	K	K	P	I	C	E	N	A	V	L	L	V	I	K	Q	I	G	Y	E	G	L	E	S	G	H	G	F	R	H	E	F	S	T	I	M	N	E	H	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	D	A	I	E	V	Q	L	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.														.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.														.	.	.	.
Template Sequence		E	E	F	L	F	N	K	.	.	.	.	.	.	.	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G
Template Known Secondary structure		T	S	B	T	T	T	T	.	.	.	.	.	.	.											G	G	G	.	.	.	.	T																										S	S	S																				T
Template Predicted Secondary structure									.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.								.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	N	G	G	S	V	R	G	I	Y	N	H	A	Q	Y	L	D
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		H	.	T	P	S	I	S	K	R	A	M	A	T	T	I	L	E	M
Template Known Secondary structure		S	.
Template Predicted Secondary structure			.
Template SS confidence
		265		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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