Job Description P37326 Confidence 99.90% Date Thu Jan 5 11:55:12 GMT 2012 Rank 4 Aligned Residues 259 % Identity 15% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure															.																																															.	.
Query SS confidence															.																																															.	.
Query Sequence		S	A	I	Y	K	E	W	Y	E	H	K	K	Q	.	V	W	S	V	G	Y	A	T	E	L	A	K	M	F	D	D	D	I	L	P	I	I	G	G	L	E	I	Q	D	I	E	P	M	Q	L	L	E	V	I	R	R	F	E	D	R	G	.	.	A	M	E	R	A	N	K	A	R	R	R	C	G	E	V	F	R	Y
Query Conservation															.																																															.	.
Alig confidence															.																		.																													.	.
Template Conservation																																	.
Template Sequence		S	Q	F	L	L	S	V	R	E	F	M	Q	T	R	Y	Y	A	K	K	T	I	E	A	Y	L	H	W	I	T	R	Y	.	I	H	F	H	N	K	K	H	P	S	L	M	G	D	K	E	V	E	E	F	L	T	Y	L	A	V	Q	G	K	V	A	T	K	T	Q	S	L	A	L	N	S	L	S	F	L	Y	K	E
Template Known Secondary structure															T	T																	.		T	T	S	S	S			G	G	G															T	T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	T	G	R	A	K	Y	N	P	A	P	D	L	A	D	A	M	K	G	Y	R	K	K	N	F	P	F	L	P	A	D	Q	I	P	A	F	N	K	A	L	A	T	F	S	G	S	I	V	S	L	I	A	T	K	V	L	R	Y	T	A	L	R	T	K	E	L	R	S	M	L	W	K	N	V	D	F	E	N
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	K	T	P	L	S	L	E	I	R	F	Q	R	S	Q	L	E	R	K	L	P	V	V	L	T	.	.	.	.	.	.	.	.	.	.	R	D	E	I	R	R	L	L	E	I	V	D	P	K	H	Q	L	P	I	K	L	L	Y	G	S	G	L	R	L	M	E	C	M	R	L	R	V	Q	D	I	D	F	D	Y
Template Known Secondary structure		T	S	S					T	T																		.	.	.	.	.	.	.	.	.	.								T	T	S	S														S									T		B	G	G	G			T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		251	.	.	.	.	.																																.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Query Sequence		R	I	I	T	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	V	M	K	G	R	K	I	H	V	V	P	M	S	D	Q	V	V	E	L	L	T	T	L	S	S	I	T	K	P	V	S	E	F	V	F	A	G	R	N	D	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation
Template Sequence		G	A	I	R	I	W	Q	G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A	L	K	E	K	Y	P	N	A	P	Y	E	F	R	W	H	Y	L	F	P	S	F	Q	L	S	L	D
Template Known Secondary structure		T								T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T		T	T	T	S	T	T	G	G	G		G	G	G	S	B	S	S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
												299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	K	K	K	P	I	C	E	N	A	V	L	L	V	I	K	Q	I	G	Y	E	G	L	E	S	G	H	G	F	R	H	E	F	S	T	I	M	N	E	H	E	W	P	A	D	A	I	E	V	Q	L	A	H	A	N	G	G	S	V	R	G	I	Y	N	H	A	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																												.
Template Conservation																																																																							.
Template Sequence		P	E	S	D	V	M	R	R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V	G	A	D	I	R	T	V	Q	E	Q	L	G	H	T	D	V	K	T	T	Q	.	I	Y	T	H	S	G
Template Known Secondary structure		T	T	T	T						B																T	T				S																		T	T											T		S	S					G	.	G	G
Template Predicted Secondary structure																																																																							.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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