Job Description P37326 Confidence 100.00% Date Thu Jan 5 11:55:12 GMT 2012 Rank 1 Aligned Residues 333 % Identity 16% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	N	G	L	Y	L	Y	V	P	V	S	G	K	K	V	W	Q	L	R	Y	K	I	D	G	K	E	K	I	L	T	V	G	K	Y	P	L	M	T	L	Q	E	A	R	D	K	A	W	T	A	R	K	D	I	S	V	G	I	D	P	V	K	A	K	K	A	S	S	N	N	N	S	F	S	A	I	Y	K	E	W
Query Conservation
Alig confidence																												.	.																														.	.
Template Conservation																												.	.																														.	.
Template Sequence		E	R	R	D	L	P	P	N	L	Y	I	R	N	N	G	Y	Y	C	Y	R	D	P	R	T	G	K	.	.	E	F	G	L	G	R	D	R	R	I	A	I	T	E	A	I	Q	A	N	I	E	L	F	S	G	H	K	H	K	.	.	P	L	T	A	R	I	N	S	D	N	S	V	T	L	H	S	W	L	D	R	Y
Template Known Secondary structure								T	T					T	T	T							T	T	T			.	.						S																								.	.											S		B
Template Predicted Secondary structure																												.	.																														.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		101	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		Y	E	H	.	K	K	Q	V	W	S	V	G	Y	A	T	E	L	A	K	M	F	D	D	D	I	L	P	I	I	G	G	L	E	I	Q	D	I	E	P	M	Q	L	L	E	V	I	R	R	F	E	D	R	G	A	M	E	R	A	N	K	A	R	R	R	C	G	E	V	F	R	Y	A	I	V	T	G	R	A	K	Y
Query Conservation					.
Alig confidence					.																			.
Template Conservation																								.
Template Sequence		E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	.	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A	I	A	E	G	H	I	T	T
Template Known Secondary structure							T	T	T															.						S		S		B	G	G	G																T	T																						T	T	S		S	S
Template Predicted Secondary structure																								.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	A	P	D	L	A	D	A	M	K	G	Y	R	K	K	N	F	P	F	L	P	A	D	Q	I	P	A	F	N	K	A	L	A	T	F	S	G	S	I	V	S	L	I	A	T	K	V	L	R	Y	T	A	L	R	T	K	E	L	R	S	M	L	W	K	N	V	D	F	E	N	R	I	I	T	I	D	A	S	V
Query Conservation
Alig confidence																																.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		N	H	V	A	A	T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	.	.	.	.	.	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L	Y	V	E	Q	S	K	T	G
Template Known Secondary structure			T	T	T	T	S									B															T	.	.	.	.	.	T	S	S																						T	T		B	G	G	G			T	T							T	T	T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure						.	.	.																																																									.	.	.
Query SS confidence						.	.	.																																																									.	.	.
Query Sequence		M	K	G	R	.	.	.	K	I	H	V	V	P	M	S	D	Q	V	V	E	L	L	T	T	L	S	S	I	T	K	P	V	S	E	F	V	F	A	G	R	N	D	K	K	K	P	I	C	E	N	A	V	L	L	V	I	K	Q	I	G	Y	E	G	.	.	.	L	E	S	G	H	G	F	R	H	E	F	S	T	I
Query Conservation						.	.	.																																																									.	.	.
Alig confidence						.	.	.																																																									.	.	.										.
Template Conservation																																																																													.
Template Sequence		V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E	L	R	S	.	L	S	A	R
Template Known Secondary structure								T	T				T	T	T	T														T		S	S	B	S	S			T	T	S																				T				S	S	B				T	T					.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	E	H	E	W	P	A	D	A	I	E	V	Q	L	A	H	A	N	G	G	S	V	R	G	I	Y	N	H	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D	R	G	R
Template Known Secondary structure							T										T		S	S					T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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