Job Description P37326 Confidence 99.89% Date Thu Jan 5 11:55:12 GMT 2012 Rank 5 Aligned Residues 283 % Identity 13% Template c1crxA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		94	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																							.																							.
Query SS confidence																.	.																							.																							.
Query Sequence		S	A	I	Y	K	E	W	Y	E	H	K	K	Q	V	.	.	W	S	V	G	Y	A	T	E	L	A	K	M	F	D	D	D	I	L	P	I	I	G	.	G	L	E	I	Q	D	I	E	P	M	Q	L	L	E	V	I	R	R	F	E	D	R	.	G	A	M	E	R	A	N	K	A	R	R	R	C	G	E	V	F	R
Query Conservation																.	.																							.																							.
Alig confidence																.	.																							.																							.
Template Conservation
Template Sequence		D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y	L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L	N	M	L	H	R
Template Known Secondary structure														T	G	G	G	S																							T				S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.
Query Sequence		Y	A	I	V	T	G	R	A	K	Y	N	P	A	P	D	.	.	.	.	.	.	.	.	L	A	D	A	M	K	G	Y	R	K	K	N	F	P	F	L	P	A	D	Q	I	P	A	F	N	K	A	L	A	T	F	S	G	S	I	V	S	L	I	A	T	K	V	L	R	Y	T	A	L	R	T	K	E	L	R	S	M
Query Conservation																	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I	A	R	I
Template Known Secondary structure			T	T	S			G	G	G	S																		T																							T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		242	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.															.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	W	K	N	V	D	F	E	N	R	I	I	T	.	.	.	.	I	D	A	S	V	M	K	G	R	K	I	H	V	V	P	M	S	D	Q	V	V	E	L	L	T	T	L	S	S	I	T	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	E	F	V	F	A	G	R	N	D	K	K	K	P	I
Query Conservation															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S	T	R	A
Template Known Secondary structure		B	G	G	G					G	G	G											S	S	S	S		S																				T	T		G	G	G	S	T	T	S	B	S	S					T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		304	.	.	.	.	.	310	.	.	.	.	.									.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		C	E	N	A	V	L	L	V	I	K	Q	I	.	.	.	.	.	.	.	.	G	Y	E	G	L	E	S	G	H	G	F	R	H	E	F	S	T	I	M	N	E	H	E	W	P	A	D	A	I	E	V	Q	L	A	H	A	N	G	G	S	V	R	G	I	Y	N	H	A	Q	Y	L	D	K	R	R	E	M	M	Q	W
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																																												.				.
Template Conservation																																																																	.				.
Template Sequence		L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I	P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	.	Y	I	R	.	N	L	D	S	E	T	G	A	M	V	R	L
Template Known Secondary structure																S				S	S		S		S	S			T	T													T	T											T		S	S	S	T	T				.		S	T	.	T		G	G	G	S
Template Predicted Secondary structure																																																																	.				.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.		.	.	.	330	.	.	.	.	.	.	.	.
		376	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	D
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		339	340	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions