Job Description P0AF20 Confidence 98.53% Date Thu Jan 5 11:24:56 GMT 2012 Rank 65 Aligned Residues 89 % Identity 15% Template d2p4wa1 SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain PF1790-like Resolution 2.60

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	V	K	Q	L	N	S	A	A	V	Y	R	L	I	D	Q	Y	G	P	I	S	R	I	Q	I	A	E	Q	S	Q	L	A	P	A	S	V	T	K	I	T	R	Q	L	I	E	R	G	L	I	K	E	V	D	Q	Q	A	S	T	G	G	R	R	A	I	S	I	V	T	E	T	R	N	F	H	A	I	G	V
Query Conservation
Alig confidence																		.																																								.
Template Conservation																		.																																								.
Template Sequence		L	D	V	L	G	N	E	T	R	R	R	I	L	F	L	L	.	T	K	R	P	Y	F	V	S	E	L	S	R	E	L	G	V	G	Q	K	A	V	L	E	H	L	R	I	L	E	E	A	G	L	I	E	S	R	V	E	.	K	I	P	R	G	R	P	R	K	Y	Y	M	I	K	K	G	L	R	L	E	I	L	L
Template Known Secondary structure							S											.			S												T																T	T	S							.		B	T	T	B										T	T
Template Predicted Secondary structure																		.																																								.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	R	H	D	A	T	I	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	T	L	F	G	S	E	M	Y	E
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions