Job Description P0AF20 Confidence 100.00% Date Thu Jan 5 11:24:56 GMT 2012 Rank 1 Aligned Residues 393 % Identity 43% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		D	L	V	K	Q	L	N	S	A	A	V	Y	R	L	I	D	Q	Y	G	P	I	S	R	I	Q	I	A	E	Q	S	Q	L	A	P	A	S	V	T	K	I	T	R	Q	L	I	E	R	G	L	I	K	E	V	D	Q	Q	A	S	T	G	.	G	R	R	A	I	S	I	V	T	E	T	R	N	F	H	A	I	G	V
Query Conservation																																																														.
Alig confidence																																																														.
Template Conservation
Template Sequence		D	H	I	K	Q	I	N	A	G	R	V	Y	K	L	I	D	Q	K	G	P	I	S	R	I	D	L	S	K	E	S	E	L	A	P	A	S	I	T	K	I	T	R	E	L	I	D	A	H	L	I	H	E	T	T	V	Q	E	A	I	S	R	G	R	P	A	V	G	L	Q	T	N	N	L	G	W	Q	F	L	S	M
Template Known Secondary structure																					S	B										T																T	T	S													T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	R	H	D	A	T	I	T	L	F	D	L	S	S	K	V	L	A	E	E	H	Y	P	L	P	E	R	T	Q	Q	T	L	E	H	A	L	L	N	A	I	A	Q	F	I	D	S	Y	Q	R	K	L	R	E	L	I	A	I	S	V	I	L	P	G	L	V	D	P	D	S	G	K	I	H	Y	M	P	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y
Template Known Secondary structure					T	T									T	T	S														B																			T	T	T	T												S	S				T	T	T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	E	N	W	G	L	V	E	A	L	E	E	R	F	K	V	T	C	F	V	G	H	D	I	R	S	L	A	L	A	E	H	Y	F	G	A	S	Q	D	C	E	D	S	I	L	V	R	V	H	R	G	T	G	A	G	I	I	S	N	G	R	I	F	I	G	R	N	G	N	V	G	E	I	G	H	I	Q	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q	I	D
Template Known Secondary structure		B		S	S	B												S																			S	T	T	T	T		S	S							S	S	S								T	T					T	T	T	T		T	T	B		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		P	L	G	E	R	C	H	C	G	N	F	G	C	L	E	T	I	A	A	N	A	A	I	E	Q	R	V	L	N	L	L	K	Q	G	Y	Q	S	R	V	.	P	L	D	D	C	T	I	K	T	I	C	K	A	A	N	K	G	D	S	L	A	S	E	V	I	E	Y	V	G	R	H	L	G	K	T	I	A	I	A	I
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I
Template Known Secondary structure		T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	F	N	P	Q	K	I	V	I	A	G	E	I	T	E	A	D	K	V	L	L	P	A	I	E	S	C	I	N	T	Q	A	L	K	A	F	R	T	N	L	P	V	V	R	S	E	L	D	H	R	S	A	I	G	A	F	A	L	V	K	R	A	M	L	N	G	I	L	L	Q	H	L	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	F	N	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	F	Y	K	Q	A	T	M	P	G	A	A	L	I	K	Q	A	L	Y	D	G	L	L	L	M	K	V	V	E
Template Known Secondary structure							S						S	G	G	G	G	G																S						T	T							S		S	S		T	T													T	S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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