Phyre 2 alignment of P52137 with c3hfxA

Job Description P52137
Confidence 1.47% Date Thu Jan 5 12:05:41 GMT 2012

Rank 26 Aligned Residues 248

% Identity 12% Template c3hfxA_

PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter

Resolution 3.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	F	I	A	D	T	A	S	L	P	L	I	V	S	N	L	V	N	I	V	S	A	D	F	F	G	L	S	F	A	Q	Y	A	S	V	M	I	S	V	D	A	A	A	I	A	A	T	L	I	M	L	Y	L	F	F	R	R	V	I	P	A	T	Y	X	V	S	L	L	K	T	P	A	S	A	I	K	D	L	A
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	L	Q	K	G	V	R	I	A
Template Known Secondary structure																										T	T	S	T	T				T																				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																	.	250	.	.	.	.	.	.	.	.

	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																																						.	170	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	F	R	A	G	W	I	V	L	L	L	L	L	V	G	F	F	F	L	E	P	Q	G	I	L	V	S	A	I	A	A	A	G	A	A	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	V	A	K	R
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I
Template Known Secondary structure																																												T					S	S								T											T											T
Template Predicted Secondary structure
Template SS confidence
	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

	175	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	H	S	I	N	T	G	K	V	L	R	G	.	A	P	W	Q	I	V	I	F	S	L	G	M	Y	I	V	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	N	A	G	F	T	E	Y	L	S	G	V	L	N	L	L	A	D	K	G	L	W	A	A	T	F	G	T	G	F	L	T	A
Query Conservation													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A
Template Known Secondary structure		S	S																																			T	T	S								G	G	G												T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	L	S	S	V	M	N	N	M	P	T	V	L	I	G	A	L	S	I	D	G	S	T	A	T	G	V	V	K	E	A	M	I	Y	A	N	V	I	G	C	D	L	G	P	K	I	T	P	I	G	S	L	A	T	L	L	W	L	H	V	L	A	Q	K	N	M	T	I	T	W	G	Y	Y	F	R	T	G	I	V	M
Query Conservation
Alig confidence																																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	.	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	C	P	L
Template Known Secondary structure															T	T	S		S	S	S	S	S		S	S		S	T	T												.									S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.															.	480	.	.	.

	319	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	P	V	L	F	V	T	L	A	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	F	V	N	I	M	V	T	L	S	F	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	484	.	.	.	.	.	490	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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