Return to main results Retrieve Phyre Job Id

Job DescriptionP39394
Confidence24.89%DateThu Jan 5 12:00:29 GMT 2012
Rank14Aligned Residues47
% Identity15%Templated1je6a2
SCOP infoMHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3..... .10.........20........ .30.........40.........
Predicted Secondary structure 


..












...










Query SS confidence 





. .



















. . .




















Query Sequence  DTHSIA. . QPFEAEVSPANNRHVTVGYA. . . SRYPDYSRIPAITLKGQWLEA
Query Conservation    

  ..     
 
    
 




 ...         
 
 


 



Alig confidence 





..



















...




















Template Conservation    


 
  
  
    
 
 
  
  


     


      
   
   
Template Sequence  EPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYDRQKRRAKPQGQWAED
Template Known Secondary structure 

SSSSB
SS
TTTTTTSS
Template Predicted Secondary structure 


















Template SS confidence 



















































   1........10.........20.........30.........40.........50..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions