Return to main results Retrieve Phyre Job Id

Job DescriptionP39394
Confidence9.91%DateThu Jan 5 12:00:29 GMT 2012
Rank68Aligned Residues38
% Identity16%Templatec2pjhB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.
Predicted Secondary structure 



















Query SS confidence 









































Query Sequence  NRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVK
Query Conservation   
 




          
 
 


 






  
  
 
 
Alig confidence 















....





















Template Conservation 
  
 
  
   
   ....
 
    
  


  

 
 
 
Template Sequence  PNRLIVDEAINEDNSV. . . . VSLSQPKMDELQLFRGDTVLLK
Template Known Secondary structure  TT

S


TT....
TT

SS
Template Predicted Secondary structure 








....







Template SS confidence 









































   23......30........ .40.........50.........60
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions