Job Description P77437 Confidence 100.00% Date Thu Jan 5 12:29:18 GMT 2012 Rank 3 Aligned Residues 465 % Identity 23% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	Y	S	V	M	F	A	L	L	L	L	T	P	L	L	F	S	L	L	C	F	A	C	R	K	R	R	L	S	A	T	R	T	V	T	V	L	H	S	L	G	I	T	L	L	L	I	L	A	L	W	V	V	Q	T	A	A	D	A	G	E	I	F	A	A	G	L	W	L	H	I	D	G	L	G	G	L	F	L
Query Conservation
Alig confidence																																																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		I	T	P	Q	N	L	I	A	L	L	P	L	L	I	V	G	L	T	V	V	V	V	M	L	S	I	A	W	R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	.	.	.	.	.	Q	A	G	A	M	D	V	T	P	L	M	R	V	D	G	F	A	M	L	Y	T
Template Known Secondary structure									T	T																				T																										.	.	.	.	.		S						S	T	T	B			S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		A	I	L	G	V	I	G	F	L	T	G	I	Y	S	I	G	Y	M	R	H	E	V	A	H	G	E	L	S	P	V	T	L	C	D	Y	Y	G	F	F	H	L	F	L	F	T	M	L	L	V	V	T	S	N	N	L	I	V	M	W	A	A	I	E	A	T	T	L	S	S	A	F	L	V	G	I	Y	G	Q	.	R
Query Conservation																																																																																.
Alig confidence																										.	.	.	.	.	.	.																																																.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	.	.	.	.	.	.	.	K	D	E	F	Y	L	L	V	L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K
Template Known Secondary structure																							S	S		.	.	.	.	.	.	.																				T	B		S	S										T	T									T	T	T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	L	E	A	A	W	K	Y	I	I	I	C	T	V	G	V	A	F	G	L	F	G	T	V	L	V	Y	A	N	A	A	S	V	M	P	Q	A	E	M	A	I	F	W	S	E	V	L	K	Q	S	S	L	L	D	P	T	L	M	L	L	A	F	V	F	L	L	I	G	F	G	T	K	T	G	L	F	P	M	H
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H
Template Known Secondary structure																																S	S			S	S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.																						T		T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190														.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	L	P	D	A	H	S	E	A	P	S	P	V	S	A	L	L	S	A	V	L	L	N	C	A	L	L	V	L	I	R	Y	Y	I	I	I	C	Q	A	I	G	S	D	F	P	N	R	L	L	L	I	F	G	M	L	S	V	A	V	A	A	F	F	I	L	V	Q	R	D	I	K	R	L	L	A	Y	S	S	V
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		L	W	T	P	D	V	Y	Q	G	A	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	.	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I
Template Known Secondary structure		T									S										T																		G	G	G	G	.		S																							T			B
Template Predicted Secondary structure																																											.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																.	.																																				.	.	.
Query SS confidence																.	.																																				.	.	.
Query Sequence		E	N	M	G	L	V	A	V	E	L	G	I	G	G	.	.	P	L	G	I	F	A	A	L	L	H	I	L	N	H	S	L	A	K	T	L	L	F	C	G	S	G	N	V	L	L	K	Y	G	T	R	.	.	.	D	L	N	V	V	C	G	M	L	K	I	M	P	F	T	A	V	L	F	G	G	G	A	L	A	L
Query Conservation																.	.																																				.	.	.
Alig confidence																.	.																																				.	.	.
Template Conservation
Template Sequence		S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L
Template Known Secondary structure													T	S	S	S		S																														S			S	S				B	G	G	G		S	S		T	T	T	S														T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	M	P	P	F	N	I	F	L	S	E	F	M	T	I	T	A	G	L	A	R	N	H	L	L	I	I	V	L	L	L	L	L	L	T	L	V	L	A	G	L	V	R	M	A	A	R	V	L	M	A	K	P	P	Q	A	V	N	R	G	D	L	G	W	L	T	T	S	P	M	V	I	L	L	V	M	M	L	A
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W	Q	.	.	Y	S	A	G	G	I	V	V	L	I	S	A	L	L	V	L	V
Template Known Secondary structure		T	T		T	T	S																T	T																												S								S	T	T	.	.
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.			.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	T	H	I	P	Q	P	V	I	R	I	L	A	G	A	S	T	I	V
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		L	G	V	W	.	P	Q	P	L	I	S	I	V	R	L	A	M	P	L	M
Template Known Secondary structure						.										T
Template Predicted Secondary structure						.
Template SS confidence
		467	.	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.