Job Description P77437 Confidence 100.00% Date Thu Jan 5 12:29:18 GMT 2012 Rank 2 Aligned Residues 474 % Identity 21% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																.	.	.	70
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	A	L	L	L	L	T	P	L	L	F	S	L	L	C	F	A	C	R	K	R	R	L	S	A	T	R	T	V	T	V	L	H	S	L	G	I	T	L	L	L	I	L	A	L	W	V	V	Q	T	A	A	D	A	G	E	I	F	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	W	L
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	P	W	L	I	L	I	P	F	I	G	G	F	L	C	W	Q	T	E	R	F	G	V	K	V	P	R	W	I	A	L	I	T	M	G	L	T	L	A	L	S	L	Q	L	W	L	Q	G	G	Y	S	L	T	Q	S	A	G	I	P	Q	W	Q	S	E	F	D	M	P	W	I	P	R	F	G	I	S	I	H	L
Template Known Secondary structure																			T	T	G	G	G		T	T																								S		S	S			S		S		S	S			S									G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	D	G	L	G	G	L	F	L	A	I	L	G	V	I	G	F	L	T	G	I	Y	S	I	G	Y	M	R	H	E	V	A	H	G	E	L	S	P	V	T	L	C	D	Y	Y	G	F	F	H	L	F	L	F	T	M	L	L	V	V	T	S	N	N	L	I	V	M	W	A	A	I	E	A	T	T	L	S	S	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	D	G	L	S	L	L	M	V	V	L	T	G	L	L	G	V	L	A	V	L	C	S	W	K	E	I	E	K	Y	Q	G	F	.	.	.	.	.	.	.	.	.	.	F	H	L	N	L	M	W	I	L	G	G	V	I	G	V	F	L	A	I	D	M	F	L	F	F	F	F	W	E	M	M	L	V	P	M	Y
Template Known Secondary structure																								T	T	T	T			S	S					.	.	.	.	.	.	.	.	.	.																		B		B
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.											.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		151	.	.	.	.						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		F	L	V	G	I	.	.	.	.	.	Y	G	Q	R	S	S	L	E	A	A	W	K	Y	I	I	I	C	T	V	G	V	A	F	G	L	F	G	T	V	L	V	Y	A	N	A	A	S	V	M	P	Q	A	E	M	A	I	F	W	S	E	V	L	K	Q	S	S	L	L	D	P	T	L	M	L	L	A	F	V	F	L
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.																																												.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		F	L	I	A	L	W	G	H	K	A	S	D	G	K	T	R	I	T	A	A	T	K	F	F	I	Y	T	Q	A	S	G	L	V	M	L	I	A	I	L	A	L	V	F	V	H	Y	N	A	T	G	V	W	T	.	.	.	.	F	N	Y	E	E	L	L	N	T	P	M	S	S	G	V	E	Y	L	L	M	L	G	F
Template Known Secondary structure												S	S																																			T	T	T	S				.	.	.	.		B											T	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	F	G	T	K	T	G	L	F	P	M	H	A	W	L	P	D	A	H	S	E	A	P	S	P	V	S	A	L	L	S	A	V	L	L	N	C	A	L	L	V	L	I	R	Y	Y	I	I	I	C	Q	A	I	G	S	D	F	P	N	R	L	L	L	I	F	G	M	L	S	V	A	V	A	A	F	F	I	L
Query Conservation
Alig confidence																																																									.
Template Conservation																																																									.
Template Sequence		F	I	A	F	A	V	K	M	P	V	V	P	L	H	G	W	L	P	D	A	H	S	Q	A	P	T	A	G	S	V	D	L	A	G	I	L	L	K	T	A	A	Y	G	L	L	R	F	S	L	P	L	F	P	N	A	.	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F
Template Known Secondary structure									T	T		S	S	T	T	T									S											T														T	T	T	S				.
Template Predicted Secondary structure																																																									.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	R	D	I	K	R	L	L	A	Y	S	S	V	E	N	M	G	L	V	A	V	E	L	G	I	G	G	P	L	G	I	F	A	A	L	L	H	I	L	N	H	S	L	A	K	T	L	L	F	C	G	S	G	N	V	L	L	K	Y	G	T	R	D	L	N	V	V	C	G	M	L	K	I	M	P	F	T	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y	T	G	S	Q	L	A	Y	Q	G	A	V	I	Q	M	I	A	H	G	L	S	A	A	G	L	F	I	L	C	G	Q	L	Y	E	R	I	H	T	R	D	M	R	M	M	G	G	L	W	S	K	M	K	W	L	P	A
Template Known Secondary structure		T		S	B																					T	S																																						B	G	G	G			S	G	G	G	T		S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.				.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		L	F	G	G	G	A	L	A	L	A	G	M	P	P	F	N	I	F	L	S	E	F	M	T	I	T	A	G	L	A	R	N	H	L	L	I	I	V	L	L	L	L	L	L	T	L	V	L	A	G	L	V	R	M	A	A	R	V	L	M	A	K	P	P	Q	A	V	.	.	.	N	R	G	D	L	G	W	L	T	T
Query Conservation																																																																					.	.	.
Alig confidence																																		.																																			.	.	.
Template Conservation																																		.
Template Sequence		L	S	L	F	F	A	V	A	T	L	G	M	P	G	T	G	N	F	V	G	E	F	M	I	L	F	G	S	F	Q	V	V	.	P	V	I	T	V	I	S	T	F	G	L	V	F	A	S	V	Y	S	L	A	M	L	H	R	A	Y	F	G	K	A	K	S	Q	I	A	S	Q	E	L	P	G	M	S	L	R	E	L
Template Known Secondary structure											S			T	T	S																		.																											S	S	S	S		S	S	T	T		S	S
Template Predicted Secondary structure																																		.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	M	V	I	L	L	V	M	M	L	A	M	G	T	H	I	P	Q	P	V	I	R	I	L	A	G	A	S	T	I	V	L	S
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		F	M	I	L	L	L	V	V	L	L	V	L	L	G	F	Y	.	P	Q	P	I	L	D	T	S	H	S	A	I	G	N	I	Q	Q
Template Known Secondary structure																		.
Template Predicted Secondary structure																		.
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.		.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.