Job Description P77437 Confidence 9.80% Date Thu Jan 5 12:29:18 GMT 2012 Rank 33 Aligned Residues 164 % Identity 13% Template c3rkoF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	G	F	F	H	L	F	L	F	T	M	L	L	V	V	T	S	N	N	L	I	V	M	W	A	A	I	E	A	T	T	L	S	S	A	F	L	V	G	I	Y	G	Q	R	S	S	L	E	A	A	W	K	Y	I	I	I	C	T	V	G	V	A	F	G	L	F	G	T	V	L	V	Y	A	N	A	A	S	V	M
Query Conservation
Alig confidence																																															.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	G	A	Y	.	.	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																					S																						T	T			.	.									T																.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	E	M	A	I	F	W	S	E	V	L	K	Q	S	S	L	L	D	P	T	L	M	L	L	A	F	V	F	L	L	I	G	F	G	T	K	T	G	L	F	P	M	H	A	W	L	P	D	A	H	S	E	A	P	S	P	V	S	A	L	L	S	A	V	L	L	N	C	A	L	L	V	L	I	R	Y	Y	I
Query Conservation
Alig confidence		.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	G	I	D	G	T	P	I	.	.	.	.	.	.	.	.	S	A	K	A	V	G	I	T	L	F	G	P	Y	V	L
Template Known Secondary structure		.	.	.	.	.	.				S	S	T	T						T	T		S																							T	T	S											.	.	.	.	.	.	.	.										T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.
Template SS confidence
								74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	C	Q	A	I	G	S	D	F	P	N	R	L	L	L	I	F	G	M	L	S	V	A	V	A	A	F	F	I	L	V	Q	R	D	I	K	R	L	L
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	.	.	.	.	.	.	.	.	.	.	.	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E	V	L
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.																								S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.												.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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