Job Description P0ABR7 Confidence 100.00% Date Thu Jan 5 11:16:09 GMT 2012 Rank 5 Aligned Residues 351 % Identity 23% Template c2hmnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit; PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene. Resolution 1.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	A	W	T	I	P	A	R	F	Y	T	D	Q	N	A	F	E	H	E	K	E	N	V	F	A	K	S	W	I	C	V	A	H	S	S	E	L	A	N	A	N	D	Y	V	T	R	E	I	I	G	E	S	I	V	L	V	R	G	R	D	K	V	L	R	A	F	Y	N	V	C	P	H	R	G	H	Q	L	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	G	L	S	Q	K	H	L	I	H	G	D	E	E	L	F	Q	H	E	L	K	T	I	F	A	R	N	W	L	F	L	T	H	D	S	L	I	P	A	P	G	D	Y	V	T	A	K	M	G	I	D	E	V	I	V	S	R	Q	N	D	G	S	I	R	A	F	L	N	V	C	R	H	R	G	K	T	L	V	S
Template Known Secondary structure		G	G	G					G	G	G	G	T												T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S	B		T	T	T			B	S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																			.	.														.
Query SS confidence																																			.	.														.
Query Sequence		G	E	G	K	A	K	N	V	I	T	C	P	Y	H	A	W	A	F	K	L	D	G	N	L	A	H	A	R	N	C	E	N	V	.	.	A	N	F	D	S	D	K	A	Q	L	V	P	V	.	R	L	E	E	Y	A	G	F	V	F	I	N	M	D	P	N	A	T	S	V	E	D	Q	L	P	G	L	G	A	K	V
Query Conservation																																			.	.														.
Alig confidence																																			.	.														.
Template Conservation
Template Sequence		V	E	A	G	N	A	K	G	F	V	C	S	Y	H	G	W	G	F	G	S	N	G	E	L	Q	S	V	P	F	E	K	D	L	Y	G	E	S	L	N	K	K	C	L	G	L	K	E	V	A	R	V	E	S	F	H	G	F	I	Y	G	C	F	D	Q	E	A	P	P	L	M	D	Y	L	G	D	A	A	W	Y	L
Template Known Secondary structure		S	S					S					T	T	T						T	T	S						T	T						T	T				G	G	G		S			B		S						T	T						S		T	T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		176	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																			.														.	.	.	.	.
Query SS confidence																.																			.														.	.	.	.	.
Query Sequence		L	E	A	C	P	E	V	H	D	L	K	L	A	A	.	R	F	T	T	R	T	P	A	N	W	K	N	I	V	D	N	Y	L	.	E	C	Y	H	C	G	P	A	H	P	G	F	S	.	.	.	.	.	D	S	V	Q	V	D	R	Y	W	H	T	M	H	G	N	W	T	L	Q	Y	G	F	A	K	P	S	E	Q
Query Conservation																.																			.														.	.	.	.	.
Alig confidence																.																			.														.	.	.	.	.
Template Conservation
Template Sequence		E	P	M	F	K	H	S	G	G	L	E	L	V	G	P	P	G	K	V	V	I	K	A	N	W	K	A	P	A	E	N	F	V	G	D	A	Y	H	V	G	W	T	H	A	S	S	L	R	S	G	E	S	I	F	S	S	L	A	G	N	A	A	L	P	P	E	G	A	G	L	Q	M	T	S	K	Y	G	S	G	M
Template Known Secondary structure						T	T	T	S														S	S		T												T	T					T								T		T	T	G	G	G	G	G	G	S					T	T	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		249	250	.	.	.	.	.	.	.	.																																		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	K	F	E	E	G	T	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	H	G	F	W	L	W	P	C	T	M	L	N	V	T	P	I	K	G	M	M	T	V	I	Y	E	F	P	V	D	S	E	T	T	L	Q
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		G	V	L	W	D	G	Y	S	G	V	H	S	A	D	L	V	P	E	L	M	A	F	G	G	A	K	Q	E	R	L	N	K	E	I	G	D	V	R	A	R	I	Y	R	S	H	L	N	C	T	V	F	P	N	N	S	M	L	T	C	S	G	.	.	.	.	V	F	K	V	W	N	P	I	D	A	N	T	T	E	V
Template Known Secondary structure					T	T		T	T	T	T			T	T	T																												T	S							T	T	T					T	T	T	T	.	.	.	.										T	T
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320							.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	D	I	Y	F	T	N	E	E	L	T	D	E	Q	K	S	L	I	E	W	Y	R	D	V	.	.	.	.	.	.	F	R	P	E	D	L	R	L	V	E	S	V	Q	K	G	L	K	S	R	G	Y	R	G	Q	G	R	I	M	A	D	S	S	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	T	Y	A	I	V	E	K	D	M	P	E	D	L	K	R	R	L	A	D	S	V	Q	R	T	V	G	P	A	G	F	W	E	S	D	D	N	D	N	M	E	T	A	S	Q	N	G	K	K	Y	Q	S	R	D	S	D	L	L	S	N	L	G	F	G	E	D	V	Y	G	D	A	V	Y	P	G	V	V	G	K	S
Template Known Secondary structure									T	T	S																	S	T	T																		T	T	S	T	T	T	T	T							T	T	T	T					S		S	S	S		S				S	S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	S	E	H	G	I	A	H	F	H	N	L	L	A	Q	V	F	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	G	E	T	S	Y	R	G	F	Y	R	A	Y	Q	A	H	V	S
Template Known Secondary structure		S	S		S															T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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