Job Description P0ABR7 Confidence 100.00% Date Thu Jan 5 11:16:09 GMT 2012 Rank 6 Aligned Residues 350 % Identity 21% Template c2gbxE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl Resolution 2.80 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	W	T	I	P	A	R	F	Y	T	D	Q	N	A	F	E	H	E	K	E	N	V	F	A	K	S	W	I	C	V	A	H	S	S	E	L	A	N	A	N	D	Y	V	T	R	E	I	I	G	E	S	I	V	L	V	R	G	R	D	K	V	L	R	A	F	Y	N	V	C	P	H	R	G	H	Q	L	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	A	S	Q	S	R	Q	V	F	W	D	E	D	V	Y	A	L	E	I	E	R	I	F	S	R	A	W	L	M	L	G	H	E	S	L	V	P	K	P	G	D	F	I	T	T	Y	M	A	E	D	K	V	I	L	S	H	Q	S	D	G	T	F	R	A	F	I	N	S	C	S	H	R	G	N	Q	I	C	H	A
Template Known Secondary structure		T	T	T				T																T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S	S		T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		E	G	K	A	K	N	V	I	T	C	P	Y	H	A	W	A	F	K	L	D	G	N	L	A	H	A	R	N	C	E	N	V	.	.	A	N	F	D	S	D	K	A	Q	L	V	P	V	R	L	E	E	Y	A	G	F	V	F	I	N	M	D	P	N	A	T	S	V	E	D	Q	L	P	G	L	G	A	K	V	L	E
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		D	S	G	N	A	K	A	F	V	C	N	Y	H	G	W	V	F	G	Q	D	G	S	L	V	D	V	P	L	E	S	R	C	Y	H	N	S	L	D	K	Q	K	L	A	A	K	S	V	R	V	E	T	Y	K	G	F	I	F	G	C	H	D	P	E	A	P	S	L	E	D	Y	L	G	E	F	R	Y	Y	L	D	T
Template Known Secondary structure		S					S					T	T	T						T	T	S						T	T	T	T	T	T	S	T	T				T	T	T												T	T								S	S									G	G	G
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		178	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure										.	.																							.
Query SS confidence										.	.																							.
Query Sequence		A	C	P	E	V	H	D	L	.	.	K	L	A	A	R	F	T	T	R	T	P	A	N	W	K	N	I	V	D	N	Y	L	.	E	C	Y	H	C	G	P	A	H	P	G	F	S	D	S	V	Q	V	D	R	Y	W	H	T	M	H	G	N	W	T	L	Q	Y	G	F	A	K	P	S	E	Q	S	F	K	F	E	E
Query Conservation										.	.																							.
Alig confidence										.	.																							.
Template Conservation
Template Sequence		I	W	E	G	A	G	G	G	M	E	L	L	G	P	P	M	K	S	L	L	Q	C	N	W	K	V	P	A	E	N	F	I	G	D	G	Y	H	V	G	W	T	H	A	A	A	L	S	Q	I	G	G	E	L	A	G	L	A	G	N	R	A	D	I	P	F	D	D	L	G	L	Q	F	T	T	R	H	G	H	G	F
Template Known Secondary structure				T	T	T	T	T														S	S		T																		T									S	S	G	G	G	G	T	T			T	T	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		255																																						.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	A	A	F	H	G	F	W	L	W	P	C	T	M	L	N	V	T	P	I	K	G	M	M	T	V	I	Y	E	F	P	V	D	S	E	T	T	L	Q	N	Y
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		G	V	I	D	N	A	A	A	G	L	H	I	K	R	E	G	W	T	K	F	L	E	D	T	R	G	E	V	R	R	K	F	G	P	E	R	E	R	L	Y	L	G	H	W	N	C	S	I	F	P	N	C	S	F	L	Y	G	T	N	.	.	.	.	T	F	K	I	W	H	P	R	G	P	H	E	I	E	V	W	T
Template Known Secondary structure					T	T		T	T	S	S		S	S																			T									T	S							T	T	T					T	T	T	T	.	.	.	.								S	S	T	T
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.							.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.									340	.	.	.	.	.	.	.	.	.	350	.	.							.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																			.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																			.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		D	I	Y	F	T	N	E	E	L	T	D	E	Q	K	S	L	I	E	W	Y	R	D	V	F	.	.	.	.	.	.	R	P	E	D	L	R	L	V	E	S	V	Q	K	G	L	K	S	R	.	.	.	.	.	.	.	.	G	Y	R	G	Q	G	R	I	M	A	D	S	S	.	.	.	.	.	.	G	S	G	I	S
Query Conservation																										.	.	.	.	.	.																			.	.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																			.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	I	V	P	R	D	A	D	P	A	T	K	S	M	I	Q	R	E	A	I	R	T	F	G	T	A	G	T	L	E	S	D	D	G	E	N	M	S	S	A	T	Y	I	N	R	G	V	I	T	R	N	G	R	M	N	S	T	M	G	V	G	Y	E	G	P	H	P	V	Y	P	G	I	V	G	I	S	F	I	G
Template Known Secondary structure							S	S	S																	S	T	T		T	T														G	G	G	S					T	S						T	T	S	S	S					S	S	S	S	S				S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	G	I	A	H	F	H	N	L	L	A	Q	V	F	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	S	Y	R	G	F	Y	R	F	W	K	E	M	I	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions