 |
| Job Description | P0ABR7 | | Confidence | 99.20% | Date | Thu Jan 5 11:16:09 GMT 2012 |
| Rank | 44 | Aligned Residues | 72 |
| % Identity | 19% | Template | c2e76D_ |
| PDB info |
PDB header:photosynthesis | Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; |
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
|
| Resolution | 3.41 Å |
|
 |
|   |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
| Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | V | L | V | R | G | R | D | K | V | L | R | A | F | Y | N | V | C | P | H | R | G | H | Q | L | L | S | G | E | G | K | A | K | N | V | I | T | C | P | Y | H | A | W | A | F | K | L | D | G | N | L | A | H | A | R | N | C | E | N | V | A | N | F | D | S | D | K | A | Q | L | V | P | V | R | L | E | E | Y | A | G |
| Query Conservation |   |
|
|
|   |
|   |   |   |
|   |
|   |
|   |   |
|   |
|   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |
|
|   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|
|
|
|   |
|   |   |   |   | . | . |   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|   |   |
|   |
|   |   |
|
|
| . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |
|   |
|   |   |
|
| Template Sequence |   |
I | V | V | E | S | K | E | A | I | R | D | Y | G | I | N | A | V | C | T | H | L | G | C | V | V | P | W | N | A | . |
. |
A | E | N | K | F | K | C | P | C | H | G | S | Q | Y | D | E | T | G | K | V | I | R | G | P | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | L | S | L | A | L | C | H | A | T | V | Q | D | D |
| Template Known Secondary structure |   |
B |
| B |
| T | T | S | S | B |
| S | B |
|  |  |
| B |
| S | S | S |
|
| B |
|
|  |  | T | . | . | T | T | T |  |  |  |
| T | T | T |
|
|  |  |  | T | T | S |
| B |
| S | S | S |
| . | . | . | . | . | . | . | . | . | . |
| S |
|
| B |
|
| B |
|
|  |  | T | T |
| Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |
| . | . |
|
|
|  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
|   |
|   |   |
152 | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |
| Query SS confidence |   |
|
|
|
|
| Query Sequence |   |
F | V | F | I |
| Query Conservation |   |
  |
|
|
|
| Alig confidence |   |
|
|
|
|
| Template Conservation |   |
  |
|   |
|
| Template Sequence |   |
N | I | V | L |
| Template Known Secondary structure |   |
 |  | B |
|
| Template Predicted Secondary structure |   |
 |  |  |  |
| Template SS confidence |   |
|
|
|
|
|   |   |
159 | 160 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|