Job Description P0ABR7 Confidence 100.00% Date Thu Jan 5 11:16:09 GMT 2012 Rank 3 Aligned Residues 354 % Identity 23% Template c2b1xE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:naphthalene dioxygenase large subunit; PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp. Resolution 2.00 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	W	T	I	P	A	R	F	Y	T	D	Q	N	A	F	E	H	E	K	E	N	V	F	A	K	S	W	I	C	V	A	H	S	S	E	L	A	N	A	N	D	Y	V	T	R	E	I	I	G	E	S	I	V	L	V	R	G	R	D	K	V	L	R	A	F	Y	N	V	C	P	H	R	G	H	Q	L	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	W	T	V	P	A	A	I	I	N	D	P	E	V	H	D	V	E	R	E	R	I	F	G	H	A	W	V	F	L	A	H	E	S	E	I	P	E	R	G	D	Y	V	V	R	Y	I	S	E	D	Q	F	I	V	C	R	D	E	G	G	E	I	R	G	H	L	N	A	C	R	H	R	G	M	Q	V	C	R	A
Template Known Secondary structure		T	T					G	G	G	S	S												T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S	S		T	T	T				S			S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																		.	.														.
Query SS confidence																																		.	.														.
Query Sequence		E	G	K	A	K	N	V	I	T	C	P	Y	H	A	W	A	F	K	L	D	G	N	L	A	H	A	R	N	C	E	N	V	.	.	A	N	F	D	S	D	K	A	Q	L	V	P	V	.	R	L	E	E	Y	A	G	F	V	F	I	N	M	D	P	N	A	T	S	V	E	D	Q	L	P	G	L	G	A	K	V	L
Query Conservation																																		.	.														.
Alig confidence																																		.	.														.
Template Conservation
Template Sequence		E	M	G	N	T	S	H	F	R	C	P	Y	H	G	W	T	Y	S	N	T	G	S	L	V	G	V	P	A	G	K	D	A	Y	G	N	Q	L	K	K	S	D	W	N	L	R	P	M	P	N	L	A	S	Y	K	G	L	I	F	G	S	L	D	P	H	A	D	S	L	E	D	Y	L	G	D	L	K	F	Y	L	D
Template Known Secondary structure		S					S					T	T	T						T	T	S						T	T	T	T	T	T	T	T	T				G	G	G	S	S			B		S						T	T						S		T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure															.	.																			.
Query SS confidence															.	.																			.
Query Sequence		E	A	C	P	E	V	H	D	L	K	L	A	A	.	.	R	F	T	T	R	T	P	A	N	W	K	N	I	V	D	N	Y	L	.	E	C	Y	H	C	G	P	A	H	P	G	F	S	D	S	V	Q	V	D	R	Y	W	H	T	M	H	G	N	W	T	L	Q	Y	G	F	A	K	P	S	E	Q	S	F	K	F	E
Query Conservation															.	.																			.
Alig confidence															.	.																			.
Template Conservation
Template Sequence		I	V	L	D	R	S	D	A	G	L	Q	V	V	G	A	P	Q	R	W	V	I	D	A	N	W	K	L	G	A	D	N	F	V	G	D	A	Y	H	T	M	M	T	H	R	S	M	V	E	L	G	L	A	P	P	D	P	Q	F	A	L	Y	G	E	H	I	H	T	G	H	G	H	G	L	G	I	I	G	P	P	P
Template Known Secondary structure						S	S	T	T						S								S	S		T												T	T					T							T	S	S				T	T	G	G	G	S							S	T	T										T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		254																													.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.									.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	D	A	A	F	H	G	F	W	L	W	P	C	T	M	L	N	V	T	.	.	.	.	.	.	.	.	P	I	K	G	M	M	T	V	I	Y	E	F	P	V	D	S	E	T	T	L	Q	N	Y
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	P	L	P	E	F	M	G	L	P	E	N	I	V	E	E	L	E	R	R	L	T	P	E	Q	V	E	I	F	R	P	T	A	F	I	H	G	T	V	F	P	N	L	S	I	G	N	F	L	M	G	K	D	H	L	S	A	P	T	A	F	L	T	L	R	L	W	H	P	L	G	P	D	K	M	E	V	M	S
Template Known Secondary structure		T					S	G	G	G													S									T	T		S							T	T	T										S	S	T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.														.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		D	I	Y	F	T	N	E	E	L	T	D	E	Q	K	S	L	I	E	W	Y	R	D	.	.	.	.	.	.	V	F	R	P	E	D	L	R	L	V	E	S	V	Q	K	G	L	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	Y	R	G	Q	G	R	I	M	A	D	S	S	G	S	G	I	.	.
Query Conservation																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		F	F	L	V	E	K	D	A	P	D	W	F	K	D	E	S	Y	K	S	Y	L	R	T	F	G	I	S	G	G	F	E	Q	D	D	A	E	N	W	R	S	I	T	R	V	M	G	G	Q	F	A	K	T	G	E	L	N	Y	Q	M	G	R	G	V	L	E	P	D	P	N	W	T	G	P	G	E	A	Y	P	L	D
Template Known Secondary structure							T	T	S														T	T	S	S	T	T		T	T															T	T	S	T	T	G	G	G	S						T	T	T	T	T					T	T			S	S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
			357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	E	H	G	I	A	H	F	H	N	L	L	A	Q	V	F	K
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		Y	A	E	A	N	Q	R	N	F	L	E	Y	W	M	Q	L	M	L
Template Known Secondary structure																			T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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