Job Description P0ABR7 Confidence 100.00% Date Thu Jan 5 11:16:09 GMT 2012 Rank 2 Aligned Residues 351 % Identity 19% Template c1uljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:biphenyl dioxygenase large subunit; PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate Resolution 2.60 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	A	W	T	I	P	A	R	F	Y	T	D	Q	N	A	F	E	H	E	K	E	N	V	F	A	K	S	W	I	C	V	A	H	S	S	E	L	A	N	A	N	D	Y	V	T	R	E	I	I	G	E	S	I	V	L	V	R	G	R	D	K	V	L	R	A	F	Y	N	V	C	P	H	R	G	H	Q	L	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	T	G	R	L	D	P	R	I	Y	T	D	E	A	L	Y	E	Q	E	L	E	R	I	F	G	R	S	W	L	L	M	G	H	E	T	Q	I	P	K	A	G	D	F	M	T	N	Y	M	G	E	D	P	V	M	V	V	R	Q	K	N	G	E	I	R	V	F	L	N	Q	C	R	H	R	G	M	R	I	C	R
Template Known Secondary structure		T	T	T	T				G	G	G	G	T												T	T	T	T	S							G	G	G	S		S	T	T								T	T									T	T	S							S			T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		G	E	G	K	A	K	N	V	I	T	C	P	Y	H	A	W	A	F	K	L	D	G	N	L	A	H	A	R	N	C	E	N	.	V	A	N	F	D	S	D	K	A	Q	L	V	P	V	R	L	E	E	Y	A	G	F	V	F	I	N	M	D	P	N	A	T	S	V	E	D	Q	L	P	G	L	G	A	K	V	L	E
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		A	D	G	G	N	A	K	S	F	T	C	S	Y	H	G	W	A	Y	D	T	G	G	N	L	V	S	V	P	F	E	E	Q	A	F	P	G	L	R	K	E	D	W	G	P	L	Q	A	R	V	E	T	Y	K	G	L	I	F	A	N	W	D	A	D	A	P	D	L	D	T	Y	L	G	E	A	K	F	Y	M	D	H
Template Known Secondary structure		S	S					S					T	T	T						T	T							T	T						S	S			G	G	G	S	S										T	T								T	T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		178			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																														.																																											.	.	.	.	.
Query SS confidence			.	.																														.																																											.	.	.	.	.
Query Sequence		A	.	.	C	P	E	V	H	D	L	K	L	A	A	R	F	T	T	R	T	P	A	N	W	K	N	I	V	D	N	Y	L	.	E	C	Y	H	C	G	P	A	H	P	G	F	S	D	S	V	Q	V	D	R	Y	W	H	T	M	H	G	N	W	T	L	Q	Y	G	F	A	K	P	S	E	Q	S	.	.	.	.	.
Query Conservation			.	.																														.																																											.	.	.	.	.
Alig confidence			.	.																														.																																											.	.	.	.	.
Template Conservation
Template Sequence		M	L	D	R	T	E	A	G	T	E	A	I	P	G	I	Q	K	W	V	I	P	C	N	W	K	F	A	A	E	Q	F	C	S	D	M	Y	H	A	G	T	T	S	H	L	S	G	I	L	A	G	L	P	P	T	E	G	I	Q	Y	R	A	T	W	G	G	H	G	S	G	F	Y	I	G	D	P	N	L	L	L	A
Template Known Secondary structure					S	S	T	T						S									S												B					T	T	T	T	T																			S	S	S	S								S		T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
																									250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	F	E	E	G	T	D	A	A	F	H	G	F	W	L	W	P	C	T	M	L	N	V	T	P	I	K	G	M	M	T	V	I	Y	E	F	P	V	D	S	E	T	T	L	Q	N	Y	D	I	Y	F	T	N	E	E	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		I	M	G	P	K	V	T	E	Y	W	T	Q	G	P	A	A	E	K	A	S	E	R	L	G	S	T	E	R	G	Q	Q	L	M	A	Q	H	M	T	I	F	P	T	C	S	F	L	.	.	.	.	P	G	I	N	T	I	R	A	W	H	P	R	G	P	N	E	I	E	V	W	A	F	T	V	V	D	A	D	A	P
Template Known Secondary structure													S											T	T							S									T	T	T					.	.	.	.	T	T	T									S	S	T	T												T	T	S
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.															.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	E	Q	K	S	L	I	E	W	Y	R	D	.	.	.	.	.	.	V	F	R	P	E	D	L	R	L	V	E	S	V	Q	K	G	L	K	S	R	G	Y	R	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	I	M	A	D	S	S	G	S	G	I	S	E	H	G	I	A	H	F	H	N
Query Conservation															.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	M	K	E	E	Y	R	Q	Q	T	L	R	T	F	S	A	G	G	V	F	E	Q	D	D	G	E	N	W	V	E	I	Q	Q	V	L	R	G	H	K	A	R	S	R	P	F	N	A	E	M	G	L	G	Q	T	D	S	D	N	P	D	Y	P	G	T	I	S	Y	V	Y	S	E	E	A	A	R	G	L	Y	T
Template Known Secondary structure																S	S	T	T	S	T	T															T	T	S	T	G	G	G	S	S						T	T	T	T				S			S	S	S		S					S	B		S
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		367	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	Q	V	F	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	W	V	R	M	M	T
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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