Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 12 Aligned Residues 406 % Identity 21% Template c3umvB_ PDB info PDB header:lyase Chain: B: PDB Molecule:deoxyribodipyrimidine photo-lyase; PDBTitle: eukaryotic class ii cpd photolyase structure reveals a basis for2 improved uv-tolerance in plants Resolution 1.71 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	.	.	.	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D	D
Query Conservation																												.	.	.
Alig confidence																												.	.	.												.
Template Conservation																																										.
Template Sequence		V	V	Y	W	M	L	R	D	Q	R	L	A	D	N	W	A	L	L	H	A	A	G	L	A	A	A	S	A	S	P	L	A	V	A	F	A	L	F	P	R	.	P	F	L	L	S	A	R	R	R	Q	L	G	F	L	L	R	G	L	R	R	L	A	A	D	A	A	A	R	H	L	P	F	F	L	F	T	G	G	P
Template Known Secondary structure							S	S				S	S	S														T	T												T	.	T		G	G	G																							T	T							S	S		G
Template Predicted Secondary structure																																										.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	.	.	.	.	R	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N
Query Conservation																																											.	.	.	.
Alig confidence				.	.	.	.	.																																			.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		A	E	.	.	.	.	.	I	P	A	L	V	Q	R	L	G	A	S	T	L	V	A	D	F	S	P	L	R	P	V	R	E	A	L	D	A	V	V	G	D	L	R	R	E	A	P	G	V	A	V	H	Q	V	D	A	H	N	V	V	P	V	W	T	A	S	A	K	M	E	Y	S	A	K	T	F	R	G	K	V	S
Template Known Secondary structure		G	G	.	.	.	.	.									T		S																												T	T	S								S		S	S							S	S			S										T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		119	120						.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.																												.	.	.	.
Query SS confidence																															.	.	.	.																												.	.	.	.
Query Sequence		A	W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	.	.	.	.	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	.	.	.	.	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D
Query Conservation																															.	.	.	.																												.	.	.	.
Alig confidence																															.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		K	V	M	D	E	Y	L	V	E	F	P	E	L	P	A	V	V	P	W	D	R	E	Q	P	E	G	V	D	W	D	A	L	I	A	R	V	C	S	E	A	E	N	V	P	E	I	D	W	C	E	P	G	E	E	A	A	I	E	A	L	L	G	S	K	D	G	F	L	T	K	R	I	K	S	Y	E	T	D	R	N
Template Known Secondary structure		T	T					S														S																			S								S	S			S											T	T	T						T	G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		229	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure						.																																														.																									.	.	.	.	.
Query SS confidence						.																																														.																									.	.	.	.	.
Query Sequence		F	P	A	V	.	E	G	T	S	R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	.	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	.	.	.	.	.
Query Conservation						.																																														.																									.	.	.	.	.
Alig confidence						.																															.	.														.																									.	.	.	.	.
Template Conservation																																					.	.
Template Sequence		D	P	T	K	P	R	A	L	S	G	L	S	P	Y	L	H	F	G	H	I	S	A	Q	R	C	A	L	E	A	K	K	C	R	H	L	.	.	S	P	K	S	V	D	A	F	L	E	E	L	V	V	R	R	E	L	A	D	N	F	C	Y	Y	Q	P	Q	Y	D	S	L	S	G	A	W	E	W	A	R	K	T	L
Template Known Secondary structure			T	T		G	G	G	S										T	S	S												T	G	G	G	.	.	S												T														T	T	T	T	S	G	G	G	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
			302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.									370	.	.
Predicted Secondary structure		.																																																																					.	.	.	.	.	.	.	.
Query SS confidence		.																																																																					.	.	.	.	.	.	.	.
Query Sequence		.	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	.	.	.	.	.	.	.	.	Q	L	I
Query Conservation		.																																																																					.	.	.	.	.	.	.	.
Alig confidence		.																																																				.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.
Template Sequence		M	D	H	A	A	D	K	R	E	H	I	Y	T	R	E	Q	L	E	N	A	K	T	H	D	P	L	W	N	A	S	Q	L	E	M	V	H	H	G	K	M	H	G	F	M	R	M	Y	W	A	K	K	I	.	.	.	.	.	L	E	W	T	S	G	P	E	E	A	L	S	T	A	I	Y	L	N	D	K	Y	E	I
Template Known Secondary structure				T	T	T	S			S										T	T		S	S															S															.	.	.	.	.			T	S	S	S																	T
Template Predicted Secondary structure																																																						.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.						.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.					.	390	.	.	.	.	.	.	.				.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.
Predicted Secondary structure																		.	.	.	.										.	.	.																	.	.
Query SS confidence																		.	.	.	.										.	.	.																	.	.
Query Sequence		D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	.	.	.	.	T	G	T	D	A	A	P	Y	F	.	.	.	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	.	.	E	F	I	R	Q	W	L	P	E
Query Conservation																		.	.	.	.										.	.	.																	.	.
Alig confidence																		.	.	.	.										.	.	.																	.	.
Template Conservation
Template Sequence		D	G	R	D	P	S	G	Y	V	G	C	M	W	S	I	C	G	L	H	D	Q	G	W	K	E	R	P	V	F	G	K	I	R	Y	M	N	Y	A	G	C	K	R	K	F	D	V	D	A	Y	I	S	Y	V	K	R	L	A	G	Q
Template Known Secondary structure		T		S	S														T	T	S				S		B	T	T	T	B	T	S												S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.