Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 7 Aligned Residues 466 % Identity 24% Template c3tvsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																																										.	.	.
Query SS confidence																													.	.																																										.	.	.
Query Sequence		T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	.	.	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	.	.	.	I	P	L	L	F	R	E
Query Conservation																													.	.																																										.	.	.
Alig confidence																													.	.																																										.	.	.
Template Conservation
Template Sequence		A	N	V	I	W	F	R	H	G	L	R	L	H	D	N	P	A	L	L	A	A	L	A	D	K	D	Q	G	I	A	L	I	P	V	F	I	F	D	G	E	S	A	G	T	K	N	V	G	Y	N	R	M	R	F	L	L	D	S	L	Q	D	I	D	D	Q	L	Q	A	A	T	D	G	R	G	R	L	L	V	F	E
Template Known Secondary structure								S	S				S	S	S						T	T	T	G	G	G	T	T	T		B									S	S	S	S		S	T	T																				G	G	G	S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																															.	.																			.
Query SS confidence																																															.	.																			.
Query Sequence		V	D	D	F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	.	M	T	G	N	H	E	M	Y	K	V	F	T	P	F
Query Conservation																																															.	.																			.
Alig confidence				.	.	.	.																																								.	.																			.
Template Conservation				.	.	.	.
Template Sequence		G	E	.	.	.	.	P	A	Y	I	F	R	R	L	H	E	Q	V	R	L	H	R	I	C	I	E	Q	D	C	E	P	I	W	N	E	R	D	E	S	I	R	S	L	C	R	E	L	N	I	D	F	V	E	K	V	S	H	T	L	W	D	P	Q	L	V	I	E	T	N	G	G	I	P	P	L	T	Y	Q	M	F
Template Known Secondary structure		S		.	.	.	.																									G	G	G														S	S									S	S	S	S		T	T						T	T	T	S				S
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		86	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	A	W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	S	I	T	L	N	Y	P	R	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	T	V	Q	I	I	G	L	P	P	R	P	T	A	D	A	R	L	E	D	A	T	F	V	E	L	D	P	E	F	C	R	S	L	K	L	F	E	Q	L	P	T	P	E	H	F	N	V	Y	G	D	N	M	G	F	L	A	K	I	N	W	R	G	G	E	T	Q	A	L	L	L	L	D	E	R	L	K	V	E
Template Known Secondary structure						T	T	T	T		S	S																		T	T	T	T	T	T	S			B	S	S				T	T	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.									260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		A	G	E	Y	E	Q	Q	R	D	F	P	A	.	.	.	.	.	.	V	E	G	T	S	R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	.	.	.	.	.	.	.	.	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L
Query Conservation														.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	H	A	F	E	R	G	F	Y	L	P	N	Q	A	L	P	N	I	H	D	S	P	K	S	M	S	A	H	L	R	F	G	C	L	S	V	R	R	F	Y	W	S	V	H	D	L	F	K	N	V	Q	L	R	A	C	V	R	G	V	Q	M	T	G	G	A	H	I	T	G	Q	L	I	W	R	E	Y	F	Y	T	M
Template Known Secondary structure							S					T	T	T	T	S			S	S			S									T	T	S	S													T		S	S	S						S	S	S			T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	.	D	L	L	I	D	W	R	E	G	E
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		S	V	N	N	P	N	Y	D	R	M	E	G	N	D	I	C	L	S	I	P	W	A	K	P	N	E	N	L	L	Q	S	W	R	L	G	Q	T	G	F	P	L	I	D	G	A	M	R	Q	L	L	A	E	G	W	L	H	H	T	L	R	N	T	V	A	T	F	L	T	R	G	G	L	W	Q	S	W	E	H	G	L
Template Known Secondary structure					S	S		T	T	S	S	S	S		S	S											S	S							T	T		S	S														T																T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																																													.	.	.	.	.
Query SS confidence																																.																																													.	.	.	.	.
Query Sequence		R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	T	G	T	D	A	A	.	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	.	.	.	.	.
Query Conservation																																.																																													.	.	.	.	.
Alig confidence																																.																																													.	.	.	.	.
Template Conservation
Template Sequence		Q	H	F	L	K	Y	L	L	D	A	D	W	S	V	C	A	G	N	W	M	W	V	S	S	S	A	F	E	R	L	L	D	S	S	L	V	T	C	P	V	A	L	A	K	R	L	D	P	D	G	T	Y	I	K	Q	Y	V	P	E	L	M	N	V	P	K	E	F	V	H	E	P	W	R	M	S	A	E	Q	Q	E
Template Known Secondary structure									T	T														S				S	S				T						S	T	T	T					S		T	T		T	T	G	G	G	T		G	G	G	S	S	S			S	S			S						T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
			439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E	A	A	R	K	G	K
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		Q	Y	E	C	L	I	G	V	H	Y	P	E	R	I	I	D	L	S	M	A	V	K	R	N	M	L	A	M	K	S	L	R	N	S	L
Template Known Secondary structure			S	S			S	S	S	S	S				S	S		S													T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.