Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 2 Aligned Residues 462 % Identity 27% Template c3fy4C_ PDB info PDB header:lyase Chain: C: PDB Molecule:6-4 photolyase; PDBTitle: (6-4) photolyase crystal structure Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.										.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.
Query Sequence		T	T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	.	.	.	.	.	.	.	.	.	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P
Query Conservation																																												.	.	.	.	.	.	.	.	.
Alig confidence																														.														.	.	.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		S	G	S	L	I	W	F	R	K	G	L	R	V	H	D	N	P	A	L	E	Y	A	S	K	G	S	E	F	.	M	Y	P	V	F	V	I	D	P	H	Y	M	E	S	D	P	S	A	F	S	P	G	S	S	R	A	G	V	N	R	I	R	F	L	L	E	S	L	K	D	L	D	S	S	L	K	K	L	G	S	R
Template Known Secondary structure									S	S				S	T	T									T	T		S		.													S			T	T	S	S	S	S	B		S	S		B																					T	T
Template Predicted Secondary structure																														.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																				.	.																							.
Query SS confidence																																																				.	.																							.
Query Sequence		L	L	F	R	E	V	D	D	F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	.	H	E	M	Y	K
Query Conservation																																																				.	.																							.
Alig confidence									.	.	.	.																																								.	.																							.
Template Conservation									.	.	.	.
Template Sequence		L	L	V	F	K	G	E	.	.	.	.	P	G	E	V	L	V	R	C	L	Q	E	W	K	V	K	R	L	C	F	E	Y	D	T	D	P	Y	Y	Q	A	L	D	V	K	V	K	D	Y	A	S	S	T	G	V	E	V	F	S	P	V	S	H	T	L	F	N	P	A	H	I	I	E	K	N	G	G	K	P	P	L
Template Known Secondary structure							S		.	.	.	.													T		S									S																	T	T									S	S	S	S								T	T	T	S	S			S
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220
Predicted Secondary structure																																											.	.	.	.	.	.	.																														.	.
Query SS confidence																																											.	.	.	.	.	.	.																														.	.
Query Sequence		V	F	T	P	F	K	N	A	W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	S	I	T	L	N	.	.	.	.	.	.	.	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	.	.	A
Query Conservation																																											.	.	.	.	.	.	.																														.	.
Alig confidence																																											.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		S	Y	Q	S	F	L	K	V	A	G	E	P	S	C	A	K	S	E	L	V	M	S	Y	S	S	L	P	P	I	G	D	I	G	N	L	G	I	S	E	V	P	S	L	E	E	L	G	Y	K	D	D	E	Q	A	D	W	T	P	F	R	G	G	E	S	E	A	L	K	R	L	T	K	S	I	S	D	K	A	W	V
Template Known Secondary structure		S										S		T	T	S	S								S										S	S								T	T	T	T	T			G	G	G	S	S	S			S				S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																	.
Query SS confidence														.	.	.																																	.
Query Sequence		G	E	Y	E	Q	Q	R	D	F	P	A	V	.	.	.	E	G	T	S	R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	.	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R
Query Conservation														.	.	.																																	.
Alig confidence														.	.	.																																	.
Template Conservation
Template Sequence		A	N	F	E	K	P	K	G	D	P	S	A	F	L	K	P	A	T	T	V	M	S	P	Y	L	K	F	G	C	L	S	S	R	Y	F	Y	Q	C	L	Q	N	I	Y	K	D	V	K	K	H	T	S	P	P	V	S	L	L	G	Q	L	L	W	R	E	F	F	Y	T	T	A	F	G	T	P	N	F	D	K	M	K
Template Known Secondary structure						G	G	G			T	T		T	T	T	T	S	S										T	S	S															T	S	S					T	T	T	S																	T	S	T	T	T	T	S	S	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		P	F	I	A	W	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	.	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D
Query Conservation																																																												.
Alig confidence							.																																																					.
Template Conservation							.
Template Sequence		G	N	R	I	C	.	K	Q	I	P	W	N	E	D	H	A	M	L	A	A	W	R	D	G	K	T	G	Y	P	W	I	D	A	I	M	V	Q	L	L	K	W	G	W	M	H	H	L	A	R	H	C	V	A	C	F	L	T	R	G	D	L	F	I	H	W	E	Q	G	R	D	V	F	E	R	L	L	I	D	S	D
Template Known Secondary structure		T		T	T	S	.						B											T	T		S	S														T	S															T	T	T	T	T		B														T	T
Template Predicted Secondary structure							.
Template SS confidence
		320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		L	A	A	N	N	G	G	W	Q	W	A	A	S	T	G	T	D	A	A	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	.	.	.	.	.	.	Q	K	A	G	V	T	L	D	Y	P	Q
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																				.																																													.	.	.	.	.	.
Template Conservation																				.
Template Sequence		W	A	I	N	N	G	N	W	M	W	L	S	C	S	S	F	F	Y	.	Q	F	N	R	I	Y	S	P	I	S	F	G	K	K	Y	D	P	D	G	K	Y	I	R	H	F	L	P	V	L	K	D	M	P	K	Q	Y	I	Y	E	P	W	T	A	P	L	S	V	Q	T	K	A	N	C	I	V	G	K	D	Y	P	K
Template Known Secondary structure													T	T	S	S	S			.		T	T					T	T	T	T	G	G	G	T		T	T									G	G	G	T	T							T		G	G	G	S									T			B	T	T	T	B
Template Predicted Secondary structure																				.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E	A	A	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	V	L	H	D	S	A	S	K	E	C	K	R	K	M	G	E	A	Y	A
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.