Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 4 Aligned Residues 464 % Identity 28% Template c3cvyA_ PDB info PDB header:lyase/dna Chain: A: PDB Molecule:re11660p; PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		T	T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	.	.	.	.	.	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.
Template Conservation
Template Sequence		S	T	L	V	H	W	F	R	K	G	L	R	L	H	D	N	P	A	L	S	H	I	F	T	A	A	N	A	A	P	G	R	Y	F	V	R	P	I	F	I	L	D	P	G	I	L	D	W	M	Q	V	G	A	N	R	W	R	F	L	Q	Q	T	L	E	D	L	D	N	Q	L	R	K	L	N	S	R	L	F	V	V
Template Known Secondary structure									S	S				S	T	T														S	T	T	S											T	T	T	T	T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																.	.																				.
Query SS confidence																																																.	.																				.
Query Sequence		E	V	D	D	F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	.	T	G	N	H	E	M	Y	K	V	F	T	P
Query Conservation																																																.	.																				.
Alig confidence					.	.	.	.																																								.	.																				.
Template Conservation					.	.	.	.
Template Sequence		R	G	K	.	.	.	.	P	A	E	V	F	P	R	I	F	K	S	W	R	V	E	M	L	T	F	E	T	D	I	E	P	Y	S	V	T	R	D	A	A	V	Q	K	L	A	K	A	E	G	V	R	V	E	T	H	C	S	H	T	I	Y	N	P	E	L	V	I	A	K	N	L	G	K	A	P	I	T	Y	Q	K
Template Known Secondary structure			S		.	.	.	.													T											S																	T	T									S	S	S	S									T	T	T	S				S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		86	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.												.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		F	K	N	A	W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	.	.	.	.	.	.	.	.	.	.	.	P	S	P	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation
Template Sequence		F	L	G	I	V	E	Q	L	K	V	P	K	V	L	G	V	P	E	K	L	K	N	M	P	T	P	P	K	D	E	V	E	Q	K	D	S	A	A	Y	D	C	P	T	M	K	Q	L	V	K	R	P	E	E	L	G	P	N	K	F	P	G	G	E	T	E	A	L	R	R	M	E	E	S	L	K	D	E	I	W	V
Template Known Secondary structure							T	T	S														S														T	T	T	T	S									S		G	G	G						S			S												T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
			222	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.												.	.																																	.
Query SS confidence		.												.	.																																	.
Query Sequence		.	E	Y	E	Q	Q	R	D	F	P	A	V	.	.	E	G	T	S	R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	.	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P
Query Conservation		.												.	.																																	.
Alig confidence		.												.	.																																	.																															.
Template Conservation																																																																															.
Template Sequence		A	R	F	E	K	P	N	T	A	P	N	S	L	E	P	S	T	T	V	L	S	P	Y	L	K	F	G	C	L	S	A	R	L	F	N	Q	K	L	K	E	I	I	K	R	Q	P	K	H	S	Q	P	P	V	S	L	I	G	Q	L	M	W	R	E	F	Y	Y	T	V	A	A	A	E	P	N	F	D	R	.	M	L
Template Known Secondary structure						G	G	G	S		S	S		S	S		S	S										T	S	S																		S				T	T	T	S																	T		T	T	T	T	S	.	S	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		F	I	A	W	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	.	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		G	N	V	Y	C	M	Q	I	P	W	Q	E	H	P	D	H	L	E	A	W	T	H	G	R	T	G	Y	P	F	I	D	A	I	M	R	Q	L	R	Q	E	G	W	I	H	H	L	A	R	H	A	V	A	C	F	L	T	R	G	D	L	W	I	S	W	E	E	G	Q	R	V	F	E	Q	L	L	L	D	Q	D	W
Template Known Secondary structure		T		T	T																		T	T		S	S															S															T	T	T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																																																.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.
Query Sequence		A	A	N	N	G	G	W	Q	W	A	A	S	T	G	T	D	A	A	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	.	.	.	.	.	.	Q	K	A	G	V	T	L	D	Y	P	Q	P
Query Conservation																																																																.	.	.	.	.	.
Alig confidence																			.																																													.	.	.	.	.	.
Template Conservation																			.
Template Sequence		A	L	N	A	G	N	W	M	W	L	S	A	S	A	F	F	H	.	Q	Y	F	R	V	Y	S	P	V	A	F	G	K	K	T	D	P	Q	G	H	Y	I	R	K	Y	V	P	E	L	S	K	Y	P	A	G	C	I	Y	E	P	W	K	A	S	L	V	D	Q	R	A	Y	G	C	V	L	G	T	D	Y	P	H	R
Template Known Secondary structure												T	T	S	S	S			.		T	T					T	T	T	G	G	G	G	T		T	T								S	G	G	G	T	T	S						T		G	G	G	S								T	T			B	T	T	T	B
Template Predicted Secondary structure																			.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E	A	A	R	K	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	K	H	E	V	V	H	K	E	N	I	K	R	M	G	A	A	Y	K	V
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500