Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 11 Aligned Residues 406 % Identity 22% Template c2xrzA_ PDB info PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D	D	F	V	A
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		V	V	Y	W	M	S	R	D	Q	R	A	E	D	N	W	A	L	L	F	S	R	A	I	A	K	E	A	N	V	P	V	V	V	V	F	C	L	T	D	E	F	L	E	A	G	I	R	Q	Y	E	F	M	L	K	G	L	Q	E	L	E	V	S	L	S	R	K	K	I	P	S	F	F	L	R	G	D	.	.	.	.
Template Known Secondary structure							S	S				S	S	S														T	T											G	G	G	G	G	S																						T	T								S		.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N	A	W	L	K	R	L	R
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		P	G	E	K	I	S	R	F	V	K	D	Y	N	A	G	T	L	V	T	D	F	S	P	L	R	I	K	N	Q	W	I	E	K	V	I	S	G	I	.	S	I	P	F	F	E	V	D	A	H	N	V	V	P	C	W	E	A	S	Q	K	H	E	Y	A	A	H	T	F	R	P	K	L	Y	A	L	L	P	E	F	L
Template Known Secondary structure													T	T		S									S													T		.		S								S		S	S							S	S			S	S											T
Template Predicted Secondary structure																																								.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	.	.	.	.	.	.	P	S	P	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D	F	P	A	V	E	G	T	S	R
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	F	P	E	L	E	P	N	S	V	E	T	L	S	D	V	L	E	T	G	V	K	A	L	L	P	E	R	A	L	L	K	N	K	D	P	L	F	E	P	W	H	F	E	P	G	E	K	A	A	K	K	V	M	E	S	F	I	A	D	R	L	D	S	Y	G	A	L	R	N	D	P	T	K	N	M	L	S	N
Template Known Secondary structure																											G	G	G			B		T	T	S		B				T	T	S	S			S															T								T	T		T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																										.																									.	.	.	.	.	.
Query SS confidence																																										.																									.	.	.	.	.	.
Query Sequence		L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	.	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	.	.	.	.	.	.	T	D	R	V	Q	W	Q	S	N
Query Conservation																																										.																									.	.	.	.	.	.
Alig confidence																										.	.	.														.																									.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		L	S	P	Y	L	H	F	G	Q	I	S	S	Q	R	V	V	L	E	V	E	K	A	E	S	.	.	.	N	P	G	S	K	K	A	F	L	D	E	I	L	I	W	K	E	I	S	D	N	F	C	Y	Y	N	P	G	Y	D	G	F	E	S	F	P	S	W	A	K	E	S	L	N	A	H	R	N	D	V	R	S	H
Template Known Secondary structure									T	S	S												S			.	.	.																											T	T	T	T	S	G	G	G	S											T	T	T	S			S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	.	.	.	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		I	Y	T	L	E	E	F	E	A	G	K	T	H	D	P	L	W	N	A	S	Q	M	E	L	L	S	T	G	K	M	H	G	Y	T	R	M	Y	W	A	K	K	I	L	E	W	S	E	S	P	E	K	A	L	E	I	A	I	C	L	N	D	R	Y	E	L	D	G	R	D	P	N	G	Y	A	G	I	A	W	S	I
Template Known Secondary structure										T	T		S	S															S																	T	S	S	S																	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		388	.	390	.	.	.	.	.	.	.									.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		S	T	G	T	D	A	A	P	Y	F	.	.	.	.	.	.	.	.	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence			.									.	.	.	.	.	.	.	.																	.
Template Conservation			.																																	.
Template Sequence		G	.	G	V	H	D	R	A	W	G	E	R	E	V	T	G	K	I	R	Y	M	S	Y	E	G	C	K	R	K	F	D	V	K	L	.	Y	I	E	K	Y
Template Known Secondary structure			.		T	T	S						B	T	T	T	B	T	S										T	T	S					.					T
Template Predicted Secondary structure			.																																	.
Template SS confidence
		424		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.