Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 9 Aligned Residues 426 % Identity 34% Template c2e0iD_ PDB info PDB header:lyase Chain: D: PDB Molecule:432aa long hypothetical deoxyribodipyrimidine photolyase; PDBTitle: crystal structure of archaeal photolyase from sulfolobus tokodaii with2 two fad molecules: implication of a novel light-harvesting cofactor Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		M	T	T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	.	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D
Query Conservation																																												.
Alig confidence					.																										.													.
Template Conservation					.																										.
Template Sequence		M	D	C	.	I	F	I	F	R	R	D	L	R	L	E	D	N	T	G	L	N	Y	A	L	S	E	C	D	R	.	V	I	P	V	F	I	A	D	P	R	Q	L	I	N	N	P	Y	K	S	E	F	A	V	S	F	M	I	N	S	L	L	E	L	D	D	E	L	R	K	K	G	S	R	L	N	V	F	F	G	E
Template Known Secondary structure					.					S	S				S	S	S											S	S		.													S	S		T	T																						T	T	T								S
Template Predicted Secondary structure					.																										.
Template SS confidence
		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		D	F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N	A
Query Conservation																																													.	.
Alig confidence		.	.	.	.												.	.																											.	.																				.	.	.	.	.	.
Template Conservation		.	.	.	.												.	.																																																.	.	.	.	.	.
Template Sequence		.	.	.	.	A	E	K	V	V	S	R	F	F	N	K	.	.	V	D	A	I	Y	V	N	E	D	Y	T	P	F	S	I	S	R	D	E	K	I	R	K	V	C	E	E	N	G	I	E	F	K	A	Y	E	D	Y	L	L	T	P	K	S	L	F	H	.	.	.	.	.	.	H	R	N	F	T	S	F	Y	N	E
Template Known Secondary structure		.	.	.	.										T	T	.	.		S									S																T	T	T									S		S	S		G	G	G			.	.	.	.	.	.		S	S
Template Predicted Secondary structure		.	.	.	.												.	.																																																.	.	.	.	.	.
Template SS confidence
						79	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D	F	P	A	V	E	G	T	S	R
Query Conservation
Alig confidence																			.	.	.	.	.																																						.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																																						.	.	.	.	.	.
Template Sequence		V	S	K	V	K	V	R	E	P	E	T	M	E	G	S	F	D	.	.	.	.	.	V	T	D	S	S	M	N	V	D	F	L	L	T	F	K	K	I	E	S	P	L	F	R	G	G	R	R	E	G	L	Y	L	L	H	R	N	V	.	.	.	.	.	.	D	F	R	R	R	D	Y	P	A	E	N	N	N	Y	R
Template Known Secondary structure			T	T	S												B		.	.	.	.	.			S	S	S	B		G	G	G	G	G	G	G						T	T				S									T				.	.	.	.	.	.		G	G	G	T	T		T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.																																						.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																					.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		L	S	P	H	L	K	F	G	T	I	S	M	R	E	A	Y	Y	T	Q	.	.	.	.	.	.	.	.	.	.	K	G	K	E	E	F	V	R	E	L	Y	W	R	D	F	F	T	L	L	A	Y	Y	N	P	H	V	F	G	H	C	Y	R	R	E	Y	.	D	N	I	S	W	E	N	N	E	S	Y	F	E	A	W
Template Known Secondary structure								T	T	S	S									T	.	.	.	.	.	.	.	.	.	.	T	T																						G	G	G	T	T	S		S	S	G	G	G	.	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.											.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	T	G	T	D	A	A	P	Y	F
Query Conservation
Alig confidence																																																																															.	.
Template Conservation																																																																															.	.
Template Sequence		K	E	G	R	T	G	Y	P	I	I	D	A	G	M	R	M	L	N	S	T	G	Y	I	N	G	R	V	R	M	L	V	A	F	F	L	V	K	V	L	F	V	D	W	R	W	G	E	R	Y	F	A	T	K	L	V	D	Y	D	P	A	I	N	N	G	N	W	Q	W	I	A	S	T	G	V	D	Y	M	.	.	F
Template Known Secondary structure				T		S	S															S																	T	S																T	T														T	T	S	S	S			S	.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E	A	A	R
Query Conservation
Alig confidence																																											.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		R	V	F	N	P	W	K	Q	Q	E	K	F	D	P	E	A	K	F	I	K	E	W	V	E	E	L	K	D	V	P	P	S	I	I	H	S	I	Y	K	T	K	.	.	.	.	.	V	P	G	Y	P	S	P	I	V	N	W	L	E	R	V	N	Y	V	K	S	E	Y	K	N	V	K
Template Known Secondary structure															T	T									G	G	G	G	S	S						T	T	T	T	T	S		.	.	.	.	.		T	T	S				S	S
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.						.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.