Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 3 Aligned Residues 463 % Identity 29% Template c1u3cA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D	D	F	V	A
Query Conservation
Alig confidence																											.	.																																																		.	.	.
Template Conservation																											.	.																																																		.	.	.
Template Sequence		S	I	V	W	F	R	R	D	L	R	V	E	D	N	P	A	L	A	A	A	V	R	A	G	P	.	.	V	I	A	L	F	V	W	A	P	E	E	E	G	H	Y	H	P	G	R	V	S	R	W	W	L	K	N	S	L	A	Q	L	D	S	S	L	R	S	L	G	T	C	L	I	T	K	R	S	T	.	.	.	D
Template Known Secondary structure							S	S				S	S	S											S		.	.									G	G	G	G	T	T																									T	T									S	.	.	.
Template Predicted Secondary structure																											.	.																																																		.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N	A	W	L	K	R
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		S	V	A	S	L	L	D	V	V	K	S	T	G	A	S	Q	I	F	F	N	H	L	Y	D	P	L	S	L	V	R	D	H	R	A	K	D	V	L	T	A	Q	G	I	A	V	R	S	F	N	A	D	L	L	Y	E	P	W	E	V	T	D	E	L	G	R	P	F	S	M	F	A	A	F	W	E	R	C	L	S	M
Template Known Secondary structure														T											S																T	T	T									S		S	S		G	G	G				T	T	S				S	S										T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	S	I	T	L	N	Y	P	R	.	.	.	.	.	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D	F	P	A	V	E	G	T	S
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.
Template Conservation
Template Sequence		P	Y	D	P	E	S	P	L	L	P	P	K	K	I	I	S	G	D	V	S	K	C	V	A	D	P	L	V	F	E	D	D	S	E	K	G	S	N	A	L	L	A	R	A	W	S	P	G	W	S	N	G	D	K	A	L	T	T	F	I	N	G	P	L	L	E	Y	S	K	N	R	R	K	A	D	S	A	T	T	S
Template Known Secondary structure		S	S										S				B	S		G	G	G		S																T	T								S													T	T	G	G	G	G	T	G	G	G	T	T		S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	.	.	.	.	.	.	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	T	D	R	V	Q	W	Q	S	N
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																				.
Template Conservation																																																																.
Template Sequence		F	L	S	P	H	L	H	F	G	E	V	S	V	R	K	V	F	H	L	V	R	I	K	Q	V	A	W	A	N	E	G	N	E	A	G	E	E	S	V	N	L	F	L	K	S	I	G	L	R	E	Y	S	R	Y	I	S	F	N	H	P	Y	S	.	H	E	R	P	L	L	G	H	L	K	F	F	P	W	A	V	D
Template Known Secondary structure									T	T	S	S																				T																											T	S	T	T	T	.	T	T	S		S			T	T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	Y	F	K	A	W	R	Q	G	R	T	G	Y	P	L	V	D	A	G	M	R	E	L	W	A	T	G	W	L	H	D	R	I	R	V	V	V	S	S	F	F	V	K	V	L	Q	L	P	W	R	W	G	M	K	Y	F	W	D	T	L	L	D	A	D	L	E	S	D	A	L	G	W	Q	Y	I	T	G	T	L
Template Known Secondary structure											T		S	S															S																	T	S																T	T															T		S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		T	D	A	A	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	.	.	.	.	.	.	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A
Query Conservation																																																		.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	S	R	E	F	D	R	I	D	N	P	Q	F	E	G	Y	K	F	D	P	N	G	E	Y	V	R	R	W	L	P	E	L	S	R	L	P	T	D	W	I	H	H	P	W	N	A	P	E	S	V	L	Q	A	A	G	I	E	L	G	S	N	Y	P	L	P	I	V	G	L	D	E	A	K	A	R	L	H	E	A
Template Known Secondary structure		T	T				S	S														T	T	S								G	G	G	T	T							T		T	T	T	S									T			B	T	T	T	B				S	S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		465	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	A	A	R	K	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	Q	M	W	Q	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.