Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 5 Aligned Residues 460 % Identity 37% Template c1tezB_ PDB info PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D	D	F
Query Conservation
Alig confidence																														.																																																		.	.
Template Conservation																														.																																																		.	.
Template Sequence		A	P	I	L	F	W	H	R	R	D	L	R	L	S	D	N	I	G	L	A	A	A	R	A	Q	S	A	Q	.	L	I	G	L	F	C	L	D	P	Q	I	L	Q	S	A	D	M	A	P	A	R	V	A	Y	L	Q	G	C	L	Q	E	L	Q	Q	R	Y	Q	Q	A	G	S	R	L	L	L	L	Q	G	D	.	.
Template Known Secondary structure									S	S				S	S	S									T	T		S		.													T		T	T																								T	S							S		.	.
Template Predicted Secondary structure																														.																																																		.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N	A	W	L
Query Conservation																																											.	.
Alig confidence		.	.																																								.	.
Template Conservation		.	.
Template Sequence		.	.	P	Q	H	L	I	P	Q	L	A	Q	Q	L	Q	A	E	A	V	Y	W	N	Q	D	I	E	P	Y	G	R	D	R	D	G	Q	V	A	A	A	L	K	T	A	G	I	R	A	V	Q	L	W	D	Q	L	L	H	S	P	D	Q	I	L	S	G	S	G	N	P	Y	S	V	Y	G	P	F	W	K	N	W	Q
Template Known Secondary structure		.	.													T		S									S																	T	T									S	S	S	S		G	G	G	S			T	T	S				S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.								.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	S	I	T	L	N	Y	.	.	.	.	.	.	.	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D	F	P	A	V
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	P	K	P	T	P	V	A	T	P	T	E	L	V	D	L	S	P	E	Q	L	T	A	I	A	P	L	L	L	S	E	L	P	T	L	K	Q	L	G	F	D	W	D	G	G	F	P	V	E	P	G	E	T	A	A	I	A	R	L	Q	E	F	C	D	R	A	I	A	D	Y	D	P	Q	R	N	F	P	A	E
Template Known Secondary structure			S											S													G	G	G	S		S	S				T	G	G	G	T					S			S	S		S	S														T	G	G	G	G					T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		E	G	T	S	R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	.	.	.	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	T	D	R	V	Q	W	Q	S
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.																												.
Template Conservation																																																																	.
Template Sequence		A	G	T	S	G	L	S	P	A	L	K	F	G	A	I	G	I	R	Q	A	W	Q	A	A	S	A	A	H	A	L	S	R	S	D	E	A	R	N	S	I	R	V	W	Q	Q	E	L	A	W	R	E	F	Y	Q	H	A	L	Y	H	F	P	S	L	.	A	D	G	P	Y	R	S	L	W	Q	Q	F	P	W	E	N
Template Known Secondary structure				S									T	T	S	S															T			S																												G	G	G	.	G	G	S		S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	A	L	F	T	A	W	T	Q	A	Q	T	G	Y	P	I	V	D	A	A	M	R	Q	L	T	E	T	G	W	M	H	N	R	C	R	M	I	V	A	S	F	L	T	K	D	L	I	I	D	W	R	R	G	E	Q	F	F	M	Q	H	L	V	D	G	D	L	A	A	N	N	G	G	W	Q	W	S	A	S	S
Template Known Secondary structure											T	T		S	S															S																	T	S													T	T		T	T															T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	D	A	A	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E	A	A	R
Query Conservation
Alig confidence								.																																											.	.	.
Template Conservation								.																																											.	.	.
Template Sequence		G	M	D	P	K	P	.	L	R	I	F	N	P	A	S	Q	A	K	K	F	D	A	T	A	T	Y	I	K	R	W	L	P	E	L	R	H	V	H	P	K	D	L	I	S	G	E	I	T	P	.	.	.	I	E	R	R	G	Y	P	A	P	I	V	N	H	N	L	R	Q	K	Q	F	K	A	L	Y	N	Q	L	K
Template Known Secondary structure		S	S	S				.															T	T									G	G	G	T	T	S												T	.	.	.	T	T	S	T	T					S	S
Template Predicted Secondary structure								.																																											.	.	.
Template SS confidence
		397	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.				.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		473	.