Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 6 Aligned Residues 456 % Identity 30% Template c1np7A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure				.																																												.	.	.	.	.
Query SS confidence				.																																												.	.	.	.	.
Query Sequence		M	T	.	T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	.	.	.	.	.	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L
Query Conservation				.																																												.	.	.	.	.
Alig confidence				.																										.																		.	.	.	.	.
Template Conservation																														.
Template Sequence		V	P	P	T	V	L	V	W	F	R	N	D	L	R	L	H	D	H	E	P	L	H	R	A	L	K	S	G	.	L	A	I	T	A	V	Y	C	Y	D	P	R	Q	F	A	Q	T	H	Q	G	F	A	K	T	G	P	W	R	S	N	F	L	Q	Q	S	V	Q	N	L	A	E	S	L	Q	K	V	G	N	K	L	L
Template Known Secondary structure											S	S				S	T	T										T	T	.	S										G	G	G	G	S	B		T	T	S		B	S	S																						T	T
Template Predicted Secondary structure																														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		F	R	E	V	D	D	F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	.	.	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T
Query Conservation																																																		.	.
Alig confidence							.	.	.	.																																								.	.
Template Conservation							.	.	.	.
Template Sequence		V	T	T	G	L	.	.	.	.	P	E	Q	V	I	P	Q	I	A	K	Q	I	N	A	K	T	I	Y	Y	H	R	E	V	T	Q	E	E	L	D	V	E	R	N	L	V	K	Q	L	T	I	L	G	I	E	A	K	G	Y	W	G	S	T	L	C	H	P	E	D	L	P	F	S	I	Q	D	L	P	D	L	F	T
Template Known Secondary structure					S		.	.	.	.												T	T											S																		T									S	S	S	S		G	G	G	S	S	S		G	G	G			S	S
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		83	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.																																			.	.
Query SS confidence																																.	.	.	.	.																																			.	.
Query Sequence		P	F	K	N	A	W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	.	.	.	.	.	P	S	P	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	.	.	Q	N	G	A	G	E	Y	E	Q
Query Conservation																																.	.	.	.	.																																			.	.
Alig confidence																																.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		K	F	R	K	D	I	E	K	K	K	I	S	I	R	P	C	F	F	A	P	S	Q	L	L	P	S	P	N	I	K	L	E	L	T	A	P	P	P	E	F	F	P	Q	I	N	F	D	H	R	S	V	L	A	F	Q	G	G	E	T	A	G	L	A	R	L	Q	D	Y	F	W	H	G	D	R	L	K	D	Y	K	E
Template Known Secondary structure									T	T	T											S																	G	G	G	S							T	T	S	S						S													T	T	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		226	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Q	R	D	F	.	P	A	V	E	G	T	S	R	L	S	A	S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	T	D	R
Query Conservation						.
Alig confidence						.																																																																									.
Template Conservation																																																																															.
Template Sequence		T	R	N	G	M	V	G	A	D	Y	S	S	K	F	S	P	W	L	A	L	G	C	L	S	P	R	F	I	Y	Q	E	V	K	R	Y	E	Q	E	R	V	S	N	D	S	T	H	W	L	I	F	E	L	L	W	R	D	F	F	R	F	V	A	Q	K	Y	G	N	K	L	F	N	R	G	G	L	L	N	.	K	N
Template Known Secondary structure			T	T			S	S	S	T	T	S									T	T	S	S																T			S																								G	G	G	G	G	S	T	T	T	T	T	T	.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	W	Q	E	D	Q	V	R	F	E	L	W	R	S	G	Q	T	G	Y	P	L	V	D	A	N	M	R	E	L	N	L	T	G	F	M	S	N	R	G	R	Q	N	V	A	S	F	L	C	K	N	L	G	I	D	W	R	W	G	A	E	W	F	E	S	C	L	I	D	Y	D	V	C	S	N	W	G	N	W	N
Template Known Secondary structure					B											T	T		S	S															S																	T	T		B														T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		W	A	A	S	T	G	T	D	A	A	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	.	.	.	.	.	.	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R
Query Conservation																																																								.	.	.	.	.	.
Alig confidence													.																																											.	.	.	.	.	.
Template Conservation													.
Template Sequence		Y	T	A	G	I	G	N	D	A	R	D	.	F	R	Y	F	N	I	P	K	Q	S	Q	Q	Y	D	P	Q	G	T	Y	L	R	H	W	L	P	E	L	K	N	L	P	G	D	K	I	H	Q	P	W	L	L	S	A	T	E	Q	K	Q	W	G	V	Q	L	G	V	D	Y	P	R	P	C	V	N	F	H	Q	S	V
Template Known Secondary structure					T	S	S			T	T	S	.														S	T	T	S								G	G	G	T	T			S	G	G	G	G		G	G	G									T	T			B	T	T	T	B				S	S
Template Predicted Secondary structure													.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		459	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	R	R	K
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.