Job Description P00914 Confidence 100.00% Date Thu Jan 5 10:57:10 GMT 2012 Rank 10 Aligned Residues 412 % Identity 36% Template c1iqrA_ PDB info PDB header:lyase Chain: A: PDB Molecule:photolyase; PDBTitle: crystal structure of dna photolyase from thermus2 thermophilus Resolution 2.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N	G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D	D	F	V	A
Query Conservation
Alig confidence																										.	.														.	.	.																																			.	.	.	.
Template Conservation																										.	.														.	.	.																																			.	.	.	.
Template Sequence		L	L	V	W	H	R	G	D	L	R	L	H	D	H	P	A	L	L	E	A	L	A	R	G	.	.	P	V	V	G	L	V	V	L	D	P	N	N	L	.	.	.	K	T	T	P	R	R	R	A	W	F	L	E	N	V	R	A	L	R	E	A	Y	R	A	R	G	G	A	L	W	V	L	E	G	L	.	.	.	.
Template Known Secondary structure							S	S				S	T	T									T	T	S	.	.														.	.	.	S	S																						T	T								S		.	.	.	.
Template Predicted Secondary structure																										.	.														.	.	.																																			.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A	L	R	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N	A	W	L	K	R	L	R
Query Conservation
Alig confidence																																									.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.																															.	.	.	.	.
Template Sequence		P	W	E	K	V	P	E	A	A	R	R	L	K	A	K	A	V	Y	A	L	T	S	H	T	P	Y	G	R	Y	R	D	G	R	V	R	E	A	L	P	.	.	.	.	.	.	V	P	L	H	L	L	P	A	P	H	L	L	P	P	D	L	P	R	A	Y	R	V	Y	T	P	F	S	R	L	Y	.	.	.	.	.
Template Known Secondary structure														T		S									S															S	.	.	.	.	.	.	S										S	S		T	T		S	S			S	S						T	T		.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S	I	E	P	S	P	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D	F	P	A	V	E	G	T	S	R	L	S	A	S	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	R	G	A	A	P	P	L	P	P	P	E	A	L	P	K	G	P	E	E	G	E	I	P	R	E	D	P	G	L	P	L	P	E	P	G	E	E	A	A	L	A	G	L	R	A	F	L	E	A	K	L	P	R	Y	A	E	E	R	D	R	L	D	G	E	G	G	S	R	L	S	P	Y	F	A
Template Known Secondary structure		.	.	.	.	.	.											S	S																S	S						S															T	G	G	G					T	T		T	T		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A	W	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G
Query Conservation
Alig confidence																		.	.	.	.	.																															.
Template Conservation																		.	.	.	.	.																															.
Template Sequence		L	G	V	L	S	P	R	L	A	A	W	E	A	E	R	R	.	.	.	.	.	G	G	E	G	A	R	K	W	V	A	E	L	L	W	R	D	F	S	Y	H	L	L	Y	H	F	P	W	M	A	E	.	R	P	L	D	P	R	F	Q	A	F	P	W	Q	E	D	E	A	L	F	Q	A	W	Y	E	G	K	T	G
Template Known Secondary structure		T	T	S	S													.	.	.	.	.		S																								G	G	G	G	T	.	S		S	S	G	G	G	T	T																T		S	S
Template Predicted Secondary structure																		.	.	.	.	.																															.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W	R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	T	G	T	D	A	A	P	Y	F	R	I	F	N	P	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	L	V	D	A	A	M	R	E	L	H	A	T	G	F	L	S	N	R	A	R	M	N	A	A	Q	F	A	V	K	H	L	L	L	P	W	K	R	C	E	E	A	F	R	H	L	L	L	D	G	D	R	A	V	N	L	Q	G	W	Q	W	A	G	G	L	G	V	D	A	A	P	Y	F	R	V	F	N	P	V
Template Known Secondary structure																S																	T	S																T	T														T	T	S	S	G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L	P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	G	E	R	H	D	P	E	G	R	W	L	K	R	W	A	P	E	Y	P	S	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	D	P	V	V	D	L	E	E	A	R	R	R	Y	L	R	L	A	R
Template Known Secondary structure							T		T	T	S								T	T		S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.																				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.