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Job DescriptionP77694
Confidence75.35%DateThu Jan 5 12:31:44 GMT 2012
Rank1Aligned Residues186
% Identity19%Templatec1cb8A_
PDB info PDB header:lyaseChain: A: PDB Molecule:protein (chondroitinase ac); PDBTitle: chondroitinase ac lyase from flavobacterium heparinum
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  SGLSCKMVNYTLQTNGLSNTSIHIFPAIANSSL. . . . . . . . ASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSAD. S
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Template Sequence  KEIVC. . . . . . LGAGINSNAPENITTTLNQSWLNGPVISTAGKTGRGKITTFKAQGQFWLLHDAIGYYF. . . . PEGANLS
Template Known Secondary structure  S
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   467..470. ........480.........490.........500.........510.........520......... 530......
 
   326...330.........340.........350.........360.........370......... 380.........390....
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Query Sequence  IYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESGWYEFSTSNTLIIKP. . . . . . . . . . . RDFSISIISDEYTQT
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Template Sequence  LSTQSQKGNWFHINNSHSKDEVSGDVFKLWINHGARPENAQYAY. . . . . . IVLPGINKPEEIKKYNGTAPKVLANTNQLQ
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STTTBTTS


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   537..540.........550.........560.........570.........580 .........590.........600.........610
 
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Query Sequence  PSREGYVGS. . . . . . GESALDFGYI. VTTSG. . . . . . KTAADEVLIKVTGPAQVIGGRSYCVFSSDD. . . GKAKVPFP
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Template Sequence  AVYHQQLDMVQAIFYTAGKLSVAGIEIETDKPCAVLIKHINGKQVIWAADPLQKEKTAVLSIRDLKTGKTNRVKIDFP
Template Known Secondary structure  TTTTSSSTTSS

TTSS

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   611........620.........630.........640.........650.........660.........670.........680........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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