Job Description P0AAE0 Confidence 97.55% Date Thu Jan 5 11:12:40 GMT 2012 Rank 7 Aligned Residues 384 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.																				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	Q	S	L	R	R	N	L	T	N	R	H	I	Q	L	I	A	I	G	G	A	I	G	T	G	L	F	M	.	.	G	S	G	K	T	I	S	L	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	I	F	V	Y	M	I	I	G	F	M	L	F	F	V	M	R	A
Query Conservation																															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S
Template Known Secondary structure		S	S	T	T				S	S																																T			T	T	S		S	S														S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		M	G	E	L	L	L	S	N	L	E	Y	K	S	F	S	.	.	.	.	.	D	F	A	S	D	L	L	G	P	W	A	G	Y	F	T	G	W	T	Y	W	F	C	W	V	V	T	G	M	A	D	V	V	A	I	T	A	Y	A	Q	F	W	F	P	D	L	S	D	W	V	A	S	L	A	V	I	V	L	L	L	T
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A
Template Known Secondary structure		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.											.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	L	A	T	V	K	M	F	G	E	M	E	F	W	F	A	M	I	K	I	V	A	I	V	S	L	I	V	V	G	L	V	M	.	.	.	.	.	.	.	.	.	.	V	A	M	H	F	Q	S	P	T	G	V	E	A	S	F	A	H	L	W	N	D	G	G	W	F	P	K	G	L	S	G	F	F	A	G	F
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F
Template Known Secondary structure		T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		Q	I	A	V	F	A	F	V	G	I	E	L	V	G	T	T	A	A	E	T	K	D	P	E	K	S	L	P	R	A	I	N	S	I	P	I	R	I	I	M	F	Y	V	F	A	L	I	V	I	M	S	.	.	.	.	.	V	T	P	W	S	S	V	V	P	E	K	S	P	F	V	E	L	F	V	L	V	G	L	P
Query Conservation																																																					.	.	.	.	.
Alig confidence																							.	.																													.	.	.	.	.
Template Conservation																							.	.
Template Sequence		Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	.	.	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L
Template Known Secondary structure								T	T												T	T	.	.	T																																				T						T	T		S										T	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		A	A	A	S	V	I	N	F	V	V	L	T	S	A	A	S	S	A	N	S	G	V	F	S	T	S	R	M	L	F	G	L	A	Q	E	G	V	A	P	K	A	F	A	K	L	S	K	R	A	V	P	A	K	G	L	T	F	S	C	I	C	L	L	G	G	V	V	M	L	Y	V	N	P	S	V	.	.	.	I	G
Query Conservation																																																																													.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S
Template Known Secondary structure		T	T																															T	T	T	T	.	.	.	.	.	.	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.												.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	M	I	T	T	V	S	A	I	L	F	M	F	V	W	T	I	I	L	C	S	Y	L	V	Y	R	K	Q	R	P	H	L	H	E	K	S	I	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q
Template Known Secondary structure																															T
Template Predicted Secondary structure
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.