Job Description P0AAE0 Confidence 8.52% Date Thu Jan 5 11:12:40 GMT 2012 Rank 16 Aligned Residues 239 % Identity 11% Template c2w2eA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 Resolution 1.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.													.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		D	Q	V	K	V	V	A	D	D	Q	A	P	A	E	Q	S	L	R	R	N	L	T	N	R	H	I	Q	L	I	A	I	G	G	A	I	G	T	G	L	F	M	G	S	G	K	T	I	S	L	.	.	.	.	.	.	.	.	.	.	.	.	A	G	P	S	I	I	F	V	Y	M	I	I	.	G	F	M	L	F	F
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		D	A	P	Y	I	T	N	A	Y	K	P	A	Y	A	R	W	G	F	G	S	D	S	V	R	N	H	F	I	A	M	S	G	E	F	V	G	T	F	L	F	L	W	S	A	F	V	I	A	Q	I	A	N	Q	A	P	E	T	P	D	G	G	S	N	P	A	Q	L	I	M	I	S	F	G	F	G	F	G	V	M	V
Template Known Secondary structure		G	T					S					G	G	G	G			T	T	T	T	S																														T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure												.																																														.	.
Query SS confidence												.																																														.	.
Query Sequence		V	M	R	A	M	G	E	L	L	L	.	S	N	L	E	Y	K	S	F	S	D	F	A	S	D	L	L	G	P	W	A	G	Y	F	T	G	W	T	Y	W	F	C	W	V	V	T	G	M	A	D	V	V	A	I	T	A	.	.	Y	A	Q	F	W	F	P	D	L	S	D	W	V	A	S	L	A	V	I	V	L	L
Query Conservation												.																																														.	.
Alig confidence												.																																														.	.
Template Conservation
Template Sequence		G	V	F	I	T	Y	R	V	S	G	G	N	L	N	P	A	V	T	L	A	L	V	L	A	R	A	I	P	P	F	R	G	I	L	M	A	F	T	Q	I	V	A	G	M	A	A	A	G	A	A	S	A	M	T	P	G	E	I	A	F	A	N	A	L	G	G	G	A	S	R	T	R	G	L	F	L	E	A	F	G
Template Known Secondary structure							T	T	T	T					S										T	T	S	S																											S		S	S				S					T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	L	N	L	A	T	V	K	M	F	G	E	M	E	F	W	F	A	M	I	K	I	V	A	I	V	S	L	I	V	V	G	L	V	M	V	A	M	H	F	Q	S	P	T	G	V	E	A	S	F	A	H	L	W	N	D	G	G	W	F	P	K	G	L	S	G	F	F	A	G	F	Q	I	A	V	F	A	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	I	L	C	L	T	V	L	M	L	A	V	E	K	H	R	A	T	W	F	A	P	F	V	I	G	I	A	L	L	I	A	H	L	I	C	I	Y	Y	T	G	A	G	L	N	P	A	R	S	F	G	P	A	V	A	A	R	S	F	P	N	Y	H	W	I	Y	W	L	G	P	I	L	G	A	F	L	A	Y	S
Template Known Secondary structure													T	T	S		S	T	T	G	G	G																									S												T				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	L	V	G	T	T	A	A	E	T	K	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	W	Q	M	W	K	W	L	N	Y	Q	T	T	N	P
Template Known Secondary structure									T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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