Job Description P0AAE0 Confidence 100.00% Date Thu Jan 5 11:12:40 GMT 2012 Rank 3 Aligned Residues 447 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		K	V	V	A	D	D	Q	A	P	A	E	Q	S	L	R	R	N	L	T	N	R	H	I	Q	L	I	A	I	G	G	A	I	G	T	G	L	F	M	G	S	G	K	T	I	S	L	A	G	P	.	S	I	I	F	V	Y	M	I	I	G	F	M	L	F	F	V	M	R	A	M	G	E	L	L	L	S	N	L	E	Y
Query Conservation																																																			.
Alig confidence																																																			.																													.	.
Template Conservation																																																																																.	.
Template Sequence		R	S	L	L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.
Template Known Secondary structure			B				S	T	T	S				G	G	G			B															S	T										T	T	T	S																								T								.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	F	S	D	F	A	S	D	L	L	G	P	W	A	G	Y	F	T	G	W	T	Y	W	F	C	W	V	V	T	G	M	A	D	V	V	A	I	T	A	Y	A	Q	F	W	F	P	D	L	S	D	W	V	A	S	L	A	V	I	V	L	L	L	T	L	N	L	A	T	V	K	M	F	G	E	M	E	F	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M
Template Known Secondary structure								T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	I	K	I	V	A	I	V	S	L	I	V	V	G	L	V	M	V	A	M	H	F	Q	S	P	T	G	V	E	A	S	F	A	H	L	W	N	D	G	G	W	F	P	K	G	L	S	G	F	F	A	G	F	Q	I	A	V	F	A	F	V	G	I	E	L	V	G	T	T	A	A	E	T	K	D	P	E	K	S
Query Conservation
Alig confidence																									.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	.	.	.	.	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E
Template Known Secondary structure																									.	.	.	.	T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	R	A	I	N	S	I	P	I	R	I	I	M	F	Y	V	F	A	L	I	V	I	M	S	V	T	P	W	S	S	V	V	P	E	K	S	P	F	V	E	L	F	V	L	V	G	L	P	A	A	A	S	V	I	N	F	V	V	L	T	S	A	A	S	S	A	N	S	G	V	F	S	T	S	R	M	L	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A
Template Known Secondary structure																																					S		S											T																				T	T						T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	E	G	V	A	P	K	A	F	A	K	L	S	K	R	A	V	P	A	K	G	L	T	F	S	C	I	C	L	L	G	G	V	V	M	L	Y	V	N	P	S	V	I	G	A	F	T	M	I	T	T	V	S	A	I	L	F	M	F	V	W	T	I	I	L	C	S	Y	L	V	Y	R	K	Q	R	P	H	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	L	C	S	T	F	P	R	V	F	T	F	K	.	.	.	.	.	.	.	.	.	.	.	.	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L
Template Known Secondary structure								S	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.													T		G	G	G	T														T	T													T	T	S	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.													.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	K	S	I	Y	K	M	P	L	G	K	L	M	C	W	V	C	M	A	F	F	V	F	V	V	V	L	L	T	L	E	D	D	T	R	Q	A	L	L	V	T	P	L	W	F	I	A	L	G	L	G	W	L	F	I	G	K	K	R	A	A	E	L	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E
Template Known Secondary structure					T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.