Job Description P0AC26 Confidence 5.12% Date Thu Jan 5 11:16:59 GMT 2012 Rank 29 Aligned Residues 212 % Identity 14% Template c2d57A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:aquaporin-4; PDBTitle: double layered 2d crystal structure of aquaporin-4 (aqp4m23) at 3.2 a2 resolution by electron crystallography Resolution 3.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.																															.	.
Query SS confidence																																	.	.																															.	.
Query Sequence		N	N	P	L	G	F	W	V	S	S	A	M	A	G	A	Y	V	G	L	G	I	I	L	I	F	T	L	G	N	L	L	.	.	D	P	S	V	R	P	L	V	M	G	A	T	F	G	I	A	L	T	L	V	I	I	A	G	S	E	L	F	T	G	.	.	H	T	M	F	L	T	F	G	V	K	A	G	S	I	S
Query Conservation																																	.	.																															.	.
Alig confidence																																	.	.																															.	.
Template Conservation
Template Sequence		Q	A	F	W	K	A	V	T	A	E	F	L	A	M	L	I	F	V	L	L	S	V	G	S	T	I	N	W	G	G	S	E	N	P	L	P	V	D	M	V	L	I	S	L	C	F	G	L	S	I	A	T	M	V	Q	C	F	G	H	I	S	G	G	H	I	N	P	A	V	T	V	A	M	V	C	T	R	K	I	S
Template Known Secondary structure		T																												S	S	S	S				T																											S			S											S		S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		H	G	Q	M	W	A	I	L	P	Q	T	W	L	G	N	L	V	G	S	V	F	V	A	M	L	Y	S	W	G	G	G	S	L	L	P	V	D	T	S	I	V	H	S	V	A	L	A	K	T	T	A	P	A	M	V	L	F	F	K	G	A	L	C	N	W	L	V	C	L	A	I	W	M	A	L	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		I	A	K	S	V	F	Y	I	T	A	Q	C	L	G	A	I	I	G	A	G	I	L	Y	L	V	T	P	P	S	V	V	G	G	L	G	V	T	T	V	H	G	.	.	.	.	.	.	.	.	N	L	T	A	G	H	G	L	L	V	E	L	I	I	T	F	Q	L	V	F	T	I	F	A	S	C	D	S	K	R	T
Template Known Secondary structure																												T	T	T	G	G	G		S	S						S	.	.	.	.	.	.	.	.																											S	S	S		S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		173	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	T	E	G	.	A	A	K	F	I	A	I	W	W	C	L	L	A	F	I	A	S	G	Y	E	H	S	I	A	N	M	T	L	F	A	L	S	W	F	G	N	H	S	E	A	Y	T	L	A	G	I	G	H	N	L	L	W	V	T	L	G	N	T	L	S	G	A	V	F	M	G	L	G	Y	W	Y	A	T	P
Query Conservation						.
Alig confidence						.																																																				.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.
Template Sequence		D	V	T	G	S	V	A	L	A	I	G	F	S	V	A	I	G	H	L	F	A	I	N	Y	T	G	A	S	M	N	P	A	R	S	F	G	P	A	V	I	M	G	N	W	E	N	H	W	I	Y	W	V	G	P	I	I	.	.	.	.	.	.	.	.	.	G	A	V	L	A	G	A	L	Y	E	Y	V	F	C
Template Known Secondary structure					S																																									T	T	T										.	.	.	.	.	.	.	.	.											T	T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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