Job Description P76330 Confidence 95.92% Date Thu Jan 5 12:21:53 GMT 2012 Rank 29 Aligned Residues 231 % Identity 14% Template c3by9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the v. cholerae histidine kinase dctb2 sensor domain Resolution 1.70 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		V	L	E	D	A	Y	I	S	S	Q	R	N	H	L	E	N	V	A	N	A	L	D	K	H	L	Q	Y	N	V	D	K	L	I	F	L	R	.	.	N	G	M	R	E	A	L	V	A	P	L	D	F	T	S	L	R	D	A	V	T	E	F	E	Q	H	R	D	E	H	A	W	K	I	E	L	N	R	R	R	T	L
Query Conservation																																						.	.
Alig confidence																																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	Y	Q	A	L	L	N	E	H	Q	S	Q	L	D	R	F	S	S	H	I	V	A	T	L	D	K	Y	A	H	I	P	H	L	I	S	K	D	K	E	L	V	D	A	L	L	S	A	Q	N	S	A	Q	I	D	I	T	N	R	Y	L	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G																								T	T	T	T	T							T										T	T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	N	G	V	S	D	A	L	V	S	E	G	N	L	L	S	R	E	N	E	S	L	D	N	E	I	T	A	A	L	E	V	G	Y	L	L	R	L	A	H	N	S	S	S	M	V	E	Q	A	M	Y	V	S	R	A	G	F	Y	V	S	T	Q	P	T	L	F	T	R	N	V	P	T	R	Y	Y	G	Y	V	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	E	V	I	Q	A	A	D	T	Y	L	I	D	R	F	G	N	T	I	A	S	S	N	W	N	L	D	R	S	F	I	G	R	.	.	N	F	A	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T		S							T	T	S	B					T	T	T	T	S	T	T			T	T		.	.	B		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template SS confidence
																																										92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	W	F	I	G	H	S	Q	R	E	N	R	H	R	A	V	R	W	F	T	S	Q	P	E	H	A	S	N	T	E	P	Q	V	T	V	S	V	P	V	D	S	N	N	Y	W	Y	G	V	L	G	M	S	I	P	V	R	T	M	Q	Q	F	L	R	N	A	I	D	K	N	L	D	G	E	Y	Q	L	Y	D	S
Query Conservation
Alig confidence									.	.	.	.	.	.													.																																							.	.	.	.	.
Template Conservation									.	.	.	.	.	.													.																																							.	.	.	.	.
Template Sequence		R	P	Y	F	Y	L	S	.	.	.	.	.	.	I	A	G	Q	K	S	Q	Y	F	A	L	G	.	S	T	S	G	Q	R	G	Y	Y	Y	A	Y	P	V	I	Y	A	A	E	I	L	G	V	I	V	V	K	X	D	L	S	A	I	E	Q	G	W	Q	.	.	.	.	.	N	K	S	S	Y	F	V	A	T	D	D
Template Known Secondary structure		S							.	.	.	.	.	.	T	T	T	S									.	T	T	T														T	T												S						T			.	.	.	.	.		S	S								T
Template Predicted Secondary structure									.	.	.	.	.	.													.																																							.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320																									.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	R	F	L	T	S	S	N	P	D	H	P	T	G	N	I	F	D	P	R	E	L	A	L	L	A	Q	A	M	E	H	D	T	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R	M	D	S	R	Y	V	S	W	E	R	L	D	H	F	D	G	V
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	Q	V	V	F	X	S	S	Q	P	A	W	L	F	H	S	V	A	D	L	S	P	A	Q	L	N	D	I	R	Q	S	Q	Q	Y	L	D	S	P	I	P	S	L	G	W	Q	G	D	L	Q	A	E	Q	S	E	W	R	K	P	E	K	H	W	L	Q	D	D	Y	I	V	S	S	R	P	L	P	E	L	A	L	T
Template Known Secondary structure		T		B					S	S	G	G	G	T	T		B	S	S														T	T	T	T	T					B				B	S		T	T		S					B			T	T		S													G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	V	H	T	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	V	L	S	P	K	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions