29 c3by9A_ Probab=95.92   E-value=0.12  Score=28.99  Aligned_columns=231  Identities=14%

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             889999999999999999999999999999999999--999999743332102124677788521114788675211101
Q batch____        47 VLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLR--NGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNRRRTL  124 (564)
Q Consensus        47 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (564)
                      ..+++..+...++++..+..++..++........++  ..+...+..................                 
T Consensus         3 ~~~~~l~~~~~~~l~~~a~~l~~~l~~~~~l~~~lA~~~~l~~~l~~~~~~~~~~~~~~~l~~-----------------   65 (259)
T c3by9A_           3 FQYQALLNEHQSQLDRFSSHIVATLDKYAHIPHLISKDKELVDALLSAQNSAQIDITNRYLEQ-----------------   65 (259)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHTCHHHHHHHHTTTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH-----------------
T ss_conf             689999999999999999999999999999999984698999986157885589999999988-----------------


Q ss_pred             CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             10011333201233344422555565655532213444310122210124420578504653044341222345553112
Q batch____       125 PVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVT  204 (564)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (564)
                                                              .........++..+..|..+............+.  +...
T Consensus        66 ----------------------------------------~~~~~~~~~~~v~d~~G~~~~~~~~~~~~~~~~~--~~~~  103 (259)
T c3by9A_          66 ----------------------------------------VNEVIQAADTYLIDRFGNTIASSNWNLDRSFIGR--NFAW  103 (259)
T ss_dssp             ----------------------------------------HHHHHTCSEEEEEETTSBEEEETTTTSTTCCTTC--BCTT
T ss_pred             ----------------------------------------HHHCCCCCEEEEEECCCCEEEECCCCCCCCCCCC--CCCH
T ss_conf             ----------------------------------------6410595249999469828994588766663445--4211


Q ss_pred             CHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCEEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf             06777666521634431552022223467714899997862078188987310357876431122122478844999957
Q batch____       205 QPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDS  284 (564)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~pv~~~g~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (564)
                      ++|+...      .....+...+.. ...+.+.+.++.|++.+|...|++........+...+.     ..++..++++.
T Consensus       104 ~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~a~pv~~~g~~~gvv~~~~~l~~l~~~~~-----~~~~~~~l~d~  171 (259)
T c3by9A_         104 RPYFYLS------IAGQKSQYFALG-STSGQRGYYYAYPVIYAAEILGVIVVKXDLSAIEQGWQ-----NKSSYFVATDD  171 (259)
T ss_dssp             SHHHHHH------TTTSCEEEEEEC-TTTCCEEEEEEEEEEETTEEEEEEEEEECSHHHHHTCC-----CSSCEEEEECT
T ss_pred             HHHHHHH------HCCCCEEEECCC-CCCCCEEEEEEECCCCCCCEEEEEEEEECHHHHHHHHC-----CCCCEEEEECC
T ss_conf             3687763------036740220246-77881699994124678807898886401899998741-----78854899769


Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC------------------------HHHHHHHHHHHHCCCCCCCE
Q ss_conf             971778415310010113511057775323332101------------------------11000132111004664857
Q batch____       285 KLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRG------------------------GIRMDSRYVSWERLDHFDGV  340 (564)
Q Consensus       285 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~  340 (564)
                      +|.++.++............................                        ..........+..++..+|.
T Consensus       172 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~i~~~~W~  251 (259)
T c3by9A_         172 HQVVFXSSQPAWLFHSVADLSPAQLNDIRQSQQYLDSPIPSLGWQGDLQAEQSEWRKPEKHWLQDDYIVSSRPLPELALT  251 (259)
T ss_dssp             TCBEEEESSGGGTTCBSSCCCHHHHHHHHHHTTTTTCCCCBCCCBSCTTCSEEEEBCCTTCSCCCCEEEEEEEEGGGTEE
T ss_pred             CEEEEECCCCHHEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCE
T ss_conf             80899827801300024676724567765420023344321234666420345411445624990899999970878869


Q ss_pred             EEEEEECC
Q ss_conf             99996120
Q batch____       341 LVRVHTLS  348 (564)
Q Consensus       341 ~~~~~~~~  348 (564)
                      ++...|..
T Consensus       252 vvv~~P~~  259 (259)
T c3by9A_         252 IRVLSPKI  259 (259)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCC
T ss_conf             99996359