Phyre 2 alignment of P0AFY8 with c3n92A

Job Description P0AFY8
Confidence 6.50% Date Thu Jan 5 11:27:35 GMT 2012

Rank 63 Aligned Residues 50

% Identity 22% Template c3n92A_

PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-amylase, gh57 family; PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose

Resolution 2.89 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	88	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure														.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																		.	.	.	.	.	.	.	.
Query Sequence	V	N	R	F	M	L	L	L	S	T	L	Y	S	.	.	.	L	D	A	Q	A	F	A	E	A	T	E	S	L	H	G	R	T	.	.	.	.	.	.	.	.	R	V	Y	F	A	A	D	E	Q	T	L	L	K	N	G	N	Q	T	K	P	K	H	V	P
Query Conservation														.	.	.																		.	.	.	.	.	.	.	.
Alig confidence														.	.	.								.										.	.	.	.	.	.	.	.													.	.	.
Template Conservation																								.																														.	.	.
Template Sequence	S	R	D	F	H	R	L	A	N	E	L	V	R	Y	V	K	I	G	E	F	D	V	K	.	L	L	E	E	L	E	E	R	D	N	P	F	R	P	V	V	V	G	P	Y	V	S	E	N	P	P	E	L	E	.	.	.	E	Y	V	E	P	P	E	V	P
Template Known Secondary structure																		S						.									S				S	S				G	G	G			S	S						.	.	.	S
Template Predicted Secondary structure																								.																														.	.	.
Template SS confidence
	489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540				.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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